AMCG00020321 (cbln1,LOC106921425,LOC107090910,LOC106573707,LOC108250943)


Basic Information

Item Value
gene id AMCG00020321
gene name cbln1,LOC106921425,LOC107090910,LOC106573707,LOC108250943
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16293494 ~ 16299985 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020321
GGGGGATCTGCTGAAAATGTGAAGGGCGGGAGCATCCGCGACCGagcctttgtgtttctgttctaATATCTCACATATCAATAATTCACAGCGGCAGCAGACGGACACTGCACTATGTATTCAACTGAGCTTCAACTGGACAAGGGCCGCGCTCTGCACTCCGGGGCTTATTGGACTCAACCTTAGAGGGAGACGAGAAGGCGGGGAGCACCAGCCGAGAGAGCAAGAGCGCAccgcagagcagagcagagccagggagagagagggggcaagGACGCGCCgaacaagagaagaaaaagaaaaagaaagcataaGAGACAAGAGACGATTCCCCcttgaaggaaagaaaaaacggGGAGAGAGCATCCTACTGTTAAGCaaaagaagggaagaaaagaaagaccgtgaagagaaagaaagggggggggggaagtacAGCCTTAAAAAACTGGATTGGATAAAAAGATAAGGAGTGTCCATTTTTCTATtaagagaaagaagagaaagctGTGAAAGCCCTAGTGGGATACCGTCCTGCATTCAGGTGCAGACTGAAGTCGCCGTCATGTTGGTGCTGTTAGTGAGCGCGGTGTGGCTCACCGGATTAGTGTGCGGGCAGAATGAGACGGAGCCCATCGTCCTGGAGGGGAAATGCCTCGTCGTGTGCGACTCCAACCCCACCTCGGACCCGACGGGCACCGCGCTCGGGATATCGGTGCGGTCGGGGAGCGCAAAGGTGGCTTTCTCCGCTGTCAGAAACACCAACCACGAACCCTCCGAGATGAGCAACCGCACCATGGTCATCTACTTTGATCAGgTACTAGTGAACGTTGGGCACAATTTCGATGCGGACAGAAGCAATTTCATCGCCCCACGAAAAGGGATTTACAGTTTCAATTTCCATGTTGTGAAAGTGTATAATAGACAGACGATCCAGGTGAGCCTGATGCTGAACGGCTGGCCGGTGATCTCTGCCTTTGCCGGAGACCAGGATGTGACCCGGGAGGCTGCCAGCAACGGCGTTCTGGTGCAGATGGAGAAGGGGGACCGGGCGTACCTGAAACTGGAGAGGGGCAACCTCATGGGGGGCTGGAAATACTCCACGTTCTCAGGATTCCTGGTCTTCCCCCTCTAAAGGACTAAAACTCTTGAACGTTGGGAATCtctaaaaaaagaagaaagaagaaaaggtgGTAGGAAAACACTGGCTCTCCAATGCACACATTTAGCTGCTTGTCAGAGCTCTGGACAGCAAACTTTTATACCGTCAAATATATTCTATAAAAAAAGGCCAAGTCCTTCGTTATCTGCGCCTGTATGCGTCTGCTTCGAGGAATGTTTCTAGTCTCTATTCACAGTCAAAGAGCTGAACATCACACCTTTTTGGGAGGGgagattttaatttccttttcctttttttttctttgcatcgCCGCATTTATGTGTTCATGTACAGATCTTTCCACGCTGGGATCCATTTTATTGAATCGTTTGTTTTCACtcattgcattaaaatgaatgaagaatacacgtttttttccttttccaaatcCATGTGTGCTATAATGtatgtgcttttaatttaatgattctAGTATTTTTTGATTCTTCCTATAATGGATTCTTGGGTCACGTGTGGAGAAAGTACAAACAATATGGAGAACTCTTGCTGTATACTAATCTATAAAATCCTAAAGTTTATATATGATATAACCTATTAATAGCCAAACCTGTTTGACTAtctgtatttcagtatttcGATGTAATTTTCAGTGGTTGTGGCATATCCGGCTGCTATTTCTTCTGAtgcttcttgttttgtttcagtcaaATGTGGCGAAACTAAATGCCAGAAACTATAATGGAATTTTattataactgtaaaatatgtgtgaatatttaaaaggttctttttctttttcttttatttttttgctttaaaccaataaaatctaaatggtacttttatttttcttaaccaGACCTTA

Function

symbol description
cbln1 Orthologous to human CBLN1 (cerebellin 1 precursor).

NR:

description
PREDICTED: cerebellin-1

GO: NA

KEGG:

id description
K24235 CBLN; cerebellin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020321 True 1988 mRNA 0.45 3 16293494 16299985

Neighbor

gene id symbol gene type direction distance location
AMCG00020320 LOC106560866,LOC107738740,LOC107686280,LOC107549643 coding upstream 18920 16254493 ~ 16274574 (+)
AMCG00020319 si:ch211-216l23.1,znf423,LOC106533351,LOC107740334 coding upstream 56946 16232581 ~ 16236548 (+)
AMCG00020314 znf423,si:ch211-216l23.1,LOC107738741 coding upstream 112581 16177608 ~ 16180913 (+)
AMCG00020318 NA coding upstream 138862 16149320 ~ 16154632 (+)
AMCG00020315 NA coding upstream 180589 16104368 ~ 16112905 (+)
AMCG00020322 NA coding downstream 120338 16420323 ~ 16434057 (+)
AMCG00020326 siah1,LOC106573709 coding downstream 150851 16450836 ~ 16452635 (+)
AMCG00020327 cog4,LOC107577202 coding downstream 250101 16550086 ~ 16557457 (+)
AMCG00020338 NA coding downstream 316431 16616416 ~ 16617243 (+)
AMCG00020330 NA coding downstream 334117 16634102 ~ 16640976 (+)
G62398 NA non-coding upstream 192684 16098986 ~ 16100810 (+)
G62368 NA non-coding upstream 226678 16064095 ~ 16066816 (+)
G62282 LOC107575789 non-coding upstream 869921 15423207 ~ 15423573 (+)
G62275 NA non-coding upstream 958438 15333684 ~ 15335056 (+)
G62251 chd9,LOC106562403 non-coding upstream 995313 15297747 ~ 15298181 (+)
G62432 NA non-coding downstream 115493 16415478 ~ 16488182 (+)
G62480 NA non-coding downstream 201799 16501784 ~ 16504823 (+)
G62494 NA non-coding downstream 233371 16533356 ~ 16535401 (+)
G62504 NA non-coding downstream 247751 16547736 ~ 16565189 (+)
G62564 NA non-coding downstream 344953 16644938 ~ 16646261 (+)
AMCG00020281 slc12a4 other upstream 1820949 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 2061226 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 2342447 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 2408378 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 2420849 13863477 ~ 13872645 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 282901 16582886 ~ 16604658 (+)
G62632 NA other downstream 514389 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 1133657 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 1159159 17459144 ~ 17471869 (+)
G62895 NA other downstream 1628343 17928328 ~ 17928904 (+)

Expression


Co-expression Network