AMCG00020322


Basic Information

Item Value
gene id AMCG00020322
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16420323 ~ 16434057 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020322
GGGTGAAGAAGAGCGGACATTCACAACAACAGCGCAATGAGCGACGAGACGCAGCTGCGCGACGAGGGAGACAGCGGGCCCCGGGCCGTGCTGAGCGCCTAGACACACGCAGCGGAGACACGGGTCGTGTCGTCGGCGTACTATAATGTCAACAACTCGGCCGCCTGTGGGGGTGAAGGCGGCCAGCGGGACGGCTCCTTGTGCTTCACCGGCTCACAGCTACCCTGCGGCCGCGGCCAAGCAGCAGCCAGGGGCGCTGAACCTGGACGAGTTCGCGGTCCCCGAAGACAAGCAGGAGGAGCTGAAGGCCCTGCAGCCCCGAGTGGAGCTGCTGTTCCGGGTGGCCTTCACCATCATCGGCCTGCTAGACCCGTCCGGAGCCCACGGCAGCAGAGCGTCCCGGCAGATCTGGCTGCAGCTGAAAGGCAGGAGGGAGGATGTGGCGAAGGCGAAGGAGTATGTGAAGGGTCTGTGTAACCCAGAGCTGCAGAAGAAGGAGGGCTACCCTGCAGACATGCACTGTATCTTCATGTGGGCGCAGGGGTTGTTCCTGGACTGCCTGATATGGGACACCAGCGCAGAGGTCTCGGTGGAGCCGGGCTGTCTGCGCATCTTGGGCGGTGTGGAGGCCGTGGTGATGGCGCAGAGCCAAGTGCAGCAGTTTGTGAAGCTCTTCCGTGAGAAACGCAGCGTGCCGGGTGACAAGGAGCCTGCCATCAAAAGGACGTTCAAGAAGTTTGTGGAGGCGAGGGACGACAACTACACcatggagctgctgctgctgcccagcTCTCTGAAGGAGGCGCTGCTGACATTGGCGTTCACCGCCGGCCGGCAAGACTCGACAGACGCCAGGCTCCCAACCGCAGACCCCGTCGTGTCCCAGCCCGAGCAGGACCGAGCGCAGGCCAGCACGCCGGTCTCTATGCTGACCGAACAGATCCTCGAAACCACCTTCGAGGAGCGGGTGGGGACGCAGGATGCCGCAGGGAAGGTGCACGGCTGCAGACAGTCCTGCAAACGGAGGTCCTCCGGCAGCGAGGACCGGGACACTAAGAGGCAGTTTTCTCTGGAGGGTGGGTGCGCGGAGGTGGGAGAGCCATCGGACTCGTGCACCGTGCTGCTGGATGACAGTGGTGGCTCGGCGGCCGAGGTGGTGGTGCTGGACTCAAGTGACAACTCGGACGAGGCAGAGGTTGTGAGCCCCGAGACCAATTTCAAGTGCCTGGTGAACTTCTTCATGACCATGGGCTACCAGCAGGCACTGGTGGAGCGGGTGATCCACGAGATGGGCCAGCCCGAGGATGCCTTCGTCCTGCTGGGGCGCATCGTGGACGAGAGCCAGAGAGCCCAGGGCTCCGAGTCCCAAAACGACAACAGCCCTCACTGGGACACGCTCAATCAGAGCCCTCCTAGGGAGAAGAGCAGCACGGGCTCTTCGAAAGCCCGGGAGAAGGCGCAGAGTGTGAACTCGGTCACTGGCTGCAACATCTTAACAGAGTGGAAATCCAAAGAAAACATCCAGCCCAGTAGCAATGGCCTGAGCATCAGAGCCCCTGGCAGTGGTGGCAGCGACCAGCAGGGGGCAATACGGAAGCACCGCAATGGCCTCCTGGGCAGCGGTGAGATCATCACCATCGAGGATGATGACCTGGAGCTGGACGGCATGGCCAGGGCAGAGCGCAACGCAAGCACCTTGAGCGAGACGGACTTCCTGTCCAGAGGCAGCTCCCAGGGCTTCCGGCCGGTCCGTGTGGAGAGCGTGACTCCCCTTCGTAGTGCCGCCCAGCCACCCATGAGGCCGGAGCCTGACCTGCCCCGCCACGAGCATCCCAGCTGCTCCTCCCAGACCCCCTTCTCCTCTGCCGCCCCCCGCCGCCCACCCCAGCCGCCCAACCCTTCCCCCGTCACGGGCATCGAGCGCTTCCGCCAGTCGCTGAAGACCCCCTACAGCCTGATCCTACAGAATGAGCCGGGGAGGCCTGGGCTTCGGCACATCATCATCGACGGGAGCAACGTGGCCATGGCGCATGGGCTGAACCACTTCTTCTCCTGCCGAGGCATCGCCATCGCCGTGGAATCCTTCTGGAAGCGCGGACACCGGGAAATCACTGTCTTTGTGCCCCAGTGGAGGCTGAAGAGGGACCCACTCACTACAGAGCAGCACTTCCTCAGACAGCTGGAGGAACTCCGGCTGCTGTCCTTCACGCCGGCCAGAGAGGTATGCGGCAAGAGGATCGCCTCCCACGATGACAGGTTTCTTCTGCACCTGGCCGAGAGGACCGGGGGGGTCATTGTGACCAACGACAATTTCAAGGAGTTTGTGAGCAACTCGCAGGCGTGGATGGAGATTATCAGCGAGAGGTTACTGCAGTTCACATTTGTTGAAGATTATTTTATGATCCCAGACGATCCCCTGGGAAAGCATGGCCCCCGGCTGGAGGAGTTCCTCTGCAAAGATTTCAGgATTCCTTTAACGGCAGACCGACTGGGTCCCAGAGCGAGAGTGCCCTCTACAGGGAATGTGCTTGCAGGGCCTGTTCCTCATTTGCCCATCATGCCCCAATTGCCACCCCTCCTGCTGTGGTCCCAGCCTGGCCACCTCCTGAGGTACCCTCGCCCCgggccccccgcccccccacagAGGACTGTCTCGGAGACCGCGGAGCTCAAGCACGAGCTGTACAACATCTTCCCCGACCACAAACAAAAGATCGACCAGATACTGTCTGACAACCCCTACATGAGGGACCCGAACGCCCTGTCAGGCCTGTTGCTGGGGTAACTGggcaatacaaaacaaaatctgcgTTGGCGGGAGCTGCTCGCggcttcctgtttctttttctttcctgtgtTCTTTGAGGCAGCACTTTTGAACCTCTACCCcctcacacacaaatacacagaattcTGCAAAAGCGTGAAGAagctatttttttgtttttatatatatgtatatattaaaagacTGACTCAGCGTGGAGGGCAGGCACTGACCTGCGTGGGCAGACATGAAACTGAATTGGTCTGGGAATCAAACAGTGACCTTGCAGCGCCTAAGCTCTGTTACTGCCTGGTGAAGTGATGAGTTAATGAGACCTAACTGAGGAGAGAACTAATCAATGTCCAGTTGCACAAATCTCTGTCCATTCTTGTACATCTTTCAGAGTCCAGTCTTCTCCTGACACCAGTAGAAGGCAGTAGTTGAAATGGGGAGAGAGCGGCAcagatgtttgtatttataaagatatattttcttatttatttctgaagagattttattgtaaaaaacaaaatgctttaaaaacattaaaacaaactaccAAATCTCACTGCACAAAGAACTGCAGGAGGAATACAATCAGTTAGTCTCCTTGGTCATTTACTGTCAGAACTAAATTCCAAGAAAACTGTTTCCTTTGTCTTAAATGTCAGGGTctcctgtgtttattttttggttttgttactAAAGAATTTAGCAATATTGGGCTCAAACTGAGGCAAAACATATCTGGCACCTTTGAATAAAACGATCTGGTGTCTGTTCTCTTGCTCTCCAACTGCTTTATTCTCCACacctgtttgattgttttgctaAATTGTAGGTCAAAAACACtgtacagatatagatatatatatagatatatatata

Function

GO:

id name namespace
GO:0032269 negative regulation of cellular protein metabolic process biological_process
GO:0031981 nuclear lumen cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020322 True 3655 mRNA 0.57 7 16420323 16434057

Neighbor

gene id symbol gene type direction distance location
AMCG00020321 cbln1,LOC106921425,LOC107090910,LOC106573707,LOC108250943 coding upstream 120338 16293494 ~ 16299985 (+)
AMCG00020320 LOC106560866,LOC107738740,LOC107686280,LOC107549643 coding upstream 145749 16254493 ~ 16274574 (+)
AMCG00020319 si:ch211-216l23.1,znf423,LOC106533351,LOC107740334 coding upstream 183775 16232581 ~ 16236548 (+)
AMCG00020314 znf423,si:ch211-216l23.1,LOC107738741 coding upstream 239410 16177608 ~ 16180913 (+)
AMCG00020318 NA coding upstream 265691 16149320 ~ 16154632 (+)
AMCG00020326 siah1,LOC106573709 coding downstream 16779 16450836 ~ 16452635 (+)
AMCG00020327 cog4,LOC107577202 coding downstream 116029 16550086 ~ 16557457 (+)
AMCG00020338 NA coding downstream 182359 16616416 ~ 16617243 (+)
AMCG00020330 NA coding downstream 200045 16634102 ~ 16640976 (+)
AMCG00020332 NA coding downstream 232085 16666142 ~ 16680624 (+)
G62398 NA non-coding upstream 319513 16098986 ~ 16100810 (+)
G62368 NA non-coding upstream 353507 16064095 ~ 16066816 (+)
G62282 LOC107575789 non-coding upstream 996750 15423207 ~ 15423573 (+)
G62275 NA non-coding upstream 1085267 15333684 ~ 15335056 (+)
G62251 chd9,LOC106562403 non-coding upstream 1122142 15297747 ~ 15298181 (+)
G62480 NA non-coding downstream 67727 16501784 ~ 16504823 (+)
G62494 NA non-coding downstream 99299 16533356 ~ 16535401 (+)
G62504 NA non-coding downstream 113679 16547736 ~ 16565189 (+)
G62564 NA non-coding downstream 210881 16644938 ~ 16646261 (+)
G62617 NA non-coding downstream 359607 16793664 ~ 16793880 (+)
AMCG00020281 slc12a4 other upstream 1947778 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 2188055 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 2469276 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 2535207 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 2547678 13863477 ~ 13872645 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 148829 16582886 ~ 16604658 (+)
G62632 NA other downstream 380317 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 999585 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 1025087 17459144 ~ 17471869 (+)
G62895 NA other downstream 1494271 17928328 ~ 17928904 (+)

Expression


Co-expression Network