Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00020324 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030127.1 |
| NCBI id | CM030127.1 |
| chromosome length | 42978078 |
| location | 16474273 ~ 16479633 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016485 | protein processing | biological_process |
| GO:0016558 | protein import into peroxisome matrix | biological_process |
| GO:0006200 | obsolete ATP catabolic process | biological_process |
| GO:0006515 | protein quality control for misfolded or incompletely synthesized proteins | biological_process |
| GO:0005782 | peroxisomal matrix | cellular_component |
| GO:0009295 | nucleoid | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0004176 | ATP-dependent peptidase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004252 | serine-type endopeptidase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00020324 | True | 1160 | mRNA | 0.63 | 8 | 16474273 | 16479633 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00020325 | lonp2 | coding | downstream | 611 | 16472584 ~ 16473662 (-) |
| AMCG00020323 | LOC107577405,LOC104961177 | coding | downstream | 4986 | 16457579 ~ 16469287 (-) |
| AMCG00020317 | NA | coding | downstream | 376720 | 16088956 ~ 16097553 (-) |
| AMCG00020313 | papd5 | coding | downstream | 395568 | 16067413 ~ 16078705 (-) |
| AMCG00020312 | NA | coding | downstream | 437543 | 16012065 ~ 16036730 (-) |
| AMCG00020328 | sf3b3 | coding | upstream | 55063 | 16534696 ~ 16548548 (-) |
| AMCG00020329 | NA | coding | upstream | 78909 | 16558542 ~ 16569600 (-) |
| AMCG00020337 | NA | coding | upstream | 125983 | 16605616 ~ 16614656 (-) |
| AMCG00020333 | NA | coding | upstream | 145605 | 16625238 ~ 16631859 (-) |
| AMCG00020335 | LOC107576748 | coding | upstream | 161371 | 16641004 ~ 16644491 (-) |
| G62283 | LOC107575789 | non-coding | downstream | 1050699 | 15423155 ~ 15423574 (-) |
| G62191 | NA | non-coding | downstream | 1440197 | 15032135 ~ 15034076 (-) |
| G62143 | NA | non-coding | downstream | 1706710 | 14703511 ~ 14767563 (-) |
| G62066 | NA | non-coding | downstream | 2072971 | 14345297 ~ 14401302 (-) |
| G61943 | NA | non-coding | downstream | 2560107 | 13913172 ~ 13914166 (-) |
| G62475 | NA | non-coding | upstream | 897 | 16480530 ~ 16480990 (-) |
| G62580 | NA | non-coding | upstream | 189264 | 16668897 ~ 16669511 (-) |
| G62582 | NA | non-coding | upstream | 200223 | 16679856 ~ 16680624 (-) |
| G62655 | gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 | non-coding | upstream | 417237 | 16896870 ~ 16923733 (-) |
| G62659 | NA | non-coding | upstream | 507686 | 16987319 ~ 16989284 (-) |
| G62421 | LOC103138816,LOC103466733,LOC108251456 | other | downstream | 198700 | 16272451 ~ 16275573 (-) |
| G62415 | NA | other | downstream | 219154 | 16252788 ~ 16255119 (-) |
| G62409 | NA | other | downstream | 354120 | 16118989 ~ 16120153 (-) |
| AMCG00020316 | cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 | other | downstream | 371534 | 16098900 ~ 16102739 (-) |
| G62061 | NA | other | downstream | 2141866 | 14330522 ~ 14332407 (-) |
| AMCG00020336 | NA | other | upstream | 136690 | 16616323 ~ 16624970 (-) |
| G62618 | NA | other | upstream | 313233 | 16792866 ~ 16793167 (-) |
| AMCG00020346 | nup93,LOC103368977 | other | upstream | 315363 | 16794996 ~ 16817767 (-) |
| G62853 | necab2 | other | upstream | 1131031 | 17610664 ~ 17626189 (-) |
| AMCG00020403 | NA | other | upstream | 1507548 | 17987181 ~ 18015862 (-) |
