Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00020325 |
| gene name | lonp2 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030127.1 |
| NCBI id | CM030127.1 |
| chromosome length | 42978078 |
| location | 16472584 ~ 16473662 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| lonp2 | Predicted to enable ATP binding activity and peptidase activity. Predicted to be involved in protein processing and protein targeting to peroxisome. Predicted to act upstream of or within protein quality control for misfolded or incompletely synthesized proteins. Predicted to be located in peroxisome. Predicted to be active in peroxisomal matrix. Orthologous to human LONP2 (lon peptidase 2, peroxisomal). |
| description |
|---|
| lon protease homolog 2, peroxisomal isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0016485 | protein processing | biological_process |
| GO:0016558 | protein import into peroxisome matrix | biological_process |
| GO:0006200 | obsolete ATP catabolic process | biological_process |
| GO:0006515 | protein quality control for misfolded or incompletely synthesized proteins | biological_process |
| GO:0005782 | peroxisomal matrix | cellular_component |
| GO:0009295 | nucleoid | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0004176 | ATP-dependent peptidase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004252 | serine-type endopeptidase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00020325 | True | 477 | mRNA | 0.66 | 3 | 16472584 | 16473662 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00020323 | LOC107577405,LOC104961177 | coding | downstream | 3297 | 16457579 ~ 16469287 (-) |
| AMCG00020317 | NA | coding | downstream | 375031 | 16088956 ~ 16097553 (-) |
| AMCG00020313 | papd5 | coding | downstream | 393879 | 16067413 ~ 16078705 (-) |
| AMCG00020312 | NA | coding | downstream | 435854 | 16012065 ~ 16036730 (-) |
| AMCG00020309 | NA | coding | downstream | 538906 | 15922293 ~ 15933678 (-) |
| AMCG00020324 | NA | coding | upstream | 611 | 16474273 ~ 16479633 (-) |
| AMCG00020328 | sf3b3 | coding | upstream | 61034 | 16534696 ~ 16548548 (-) |
| AMCG00020329 | NA | coding | upstream | 84880 | 16558542 ~ 16569600 (-) |
| AMCG00020337 | NA | coding | upstream | 131954 | 16605616 ~ 16614656 (-) |
| AMCG00020333 | NA | coding | upstream | 151576 | 16625238 ~ 16631859 (-) |
| G62283 | LOC107575789 | non-coding | downstream | 1049010 | 15423155 ~ 15423574 (-) |
| G62191 | NA | non-coding | downstream | 1438508 | 15032135 ~ 15034076 (-) |
| G62143 | NA | non-coding | downstream | 1705021 | 14703511 ~ 14767563 (-) |
| G62066 | NA | non-coding | downstream | 2071282 | 14345297 ~ 14401302 (-) |
| G61943 | NA | non-coding | downstream | 2558418 | 13913172 ~ 13914166 (-) |
| G62475 | NA | non-coding | upstream | 6868 | 16480530 ~ 16480990 (-) |
| G62580 | NA | non-coding | upstream | 195235 | 16668897 ~ 16669511 (-) |
| G62582 | NA | non-coding | upstream | 206194 | 16679856 ~ 16680624 (-) |
| G62655 | gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 | non-coding | upstream | 423208 | 16896870 ~ 16923733 (-) |
| G62659 | NA | non-coding | upstream | 513657 | 16987319 ~ 16989284 (-) |
| G62421 | LOC103138816,LOC103466733,LOC108251456 | other | downstream | 197011 | 16272451 ~ 16275573 (-) |
| G62415 | NA | other | downstream | 217465 | 16252788 ~ 16255119 (-) |
| G62409 | NA | other | downstream | 352431 | 16118989 ~ 16120153 (-) |
| AMCG00020316 | cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 | other | downstream | 369845 | 16098900 ~ 16102739 (-) |
| G62061 | NA | other | downstream | 2140177 | 14330522 ~ 14332407 (-) |
| AMCG00020336 | NA | other | upstream | 142661 | 16616323 ~ 16624970 (-) |
| G62618 | NA | other | upstream | 319204 | 16792866 ~ 16793167 (-) |
| AMCG00020346 | nup93,LOC103368977 | other | upstream | 321334 | 16794996 ~ 16817767 (-) |
| G62853 | necab2 | other | upstream | 1137002 | 17610664 ~ 17626189 (-) |
| AMCG00020403 | NA | other | upstream | 1513519 | 17987181 ~ 18015862 (-) |
