AMCG00020328 (sf3b3)


Basic Information

Item Value
gene id AMCG00020328
gene name sf3b3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16534696 ~ 16548548 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020328
ATGTTCCTGTACAACCTGACGTTACAGCGTGCCACTGGCATCTCGCACGCCATCCATGGGAATTTCTCTGGAACCAAGCAGCAGGAGATCGTTGTATCCCGGGGGAAGATCCTGGAGCTGCTGCGCCCCGATGCCAACACGGGGAAGGTGCACACGTTGCTGACGATGGAGGTGTTCGGCATCGTGCGCTCGCTCATGGCCTTCCGGCTCACAGGGGGCACCAAAGATTACATTGTGGTGGGCAGCGACTCGGGCCGCATCGTGATCCTGGAGTACCAGCCCTCCAAGAACCAGTTTGAGAAGGTGCACCAGGAGACGTTCGGCAAGAGTGGATGCCGACGCATCGTCCCTGGGCAGTTCCTTGCCGTCGACCCCAAGGGCCGTGCTGTCATGATTGGTGCGATTGAGAAGCAGAAGCTGGTGTACATCCTGAACAGAGATGCGGCGGCACGTCTGACCATCTCCTCTCCCCTGGAGGCACACAAGGCCAACACGCTGGTGTACCACGTGGTGGGCGTGGACGTGGGCTTTGAGAACCCCATGTTCGCCTGCCTGGAGATGGACTACGAGGAGGCGGACAACGACCCGACGGGGGAGGCTGCAGCTAACACCCAACAGACTCTGACGTTCTATGAGCTGGACCTGGGTCTGAACCACGTGGTGCGCAAATACAGCGAGGCCCTAGAGGAGCACGGCAACTTCCTCATCACTGTGCCTGGGGGCTCTGATGGGCCCAGCGGAGTCCTCATCTGCTCGGAGAATTACATCACCTACAAGAATTTTGGAGACCAGCCTGACATTCGGTGCCCCATCCCACGCAGGAGGAATGACCTGGATGACCCAGAGCGAGGGATGATCTTCGTCTGCTCAGCCACGCACAAGACCAAGTCCATGTTCTTCTTCTTAGCGCAGACAGAGCAGGGCGACATCTTCAAGGTCACGCTGGAGACGGACGAGGAGATGGTGACAGAGATCCGGTTGAAGTATTTTGATACCATCCCTGTGGCGACAGCCATGTGCGTTCTGAAGACCGGCTTCCTGTTCGTCGCCTCGGAATTCGGCAACCACTACCTGTACCAGATCGCTCACCTGGGCGACGATGACGAGGAGCCCGAGTTCTCGTCCGCGATGCCCCTGGAGGAAGGCGACACCTTCTTCTTCCAGCCGCGGCCGCTGAAGAACCTGGTTCTGGTGGACGAGCAGGAGAGCCTGTCGCCCATCATGTCCTGCCAGATTGCTGACCTGGCTAATGAGGACACGCCCCAGCTGTATGTGGCCTGTGGCCGGGGACCCAAGTCTACTCTCAGGGTGCTGAGACATGGGTTGGAGGTGTCAGAGATGGCTGTGTCTGAGCTGCCCGGTAACCCCAACGCTGTGTGGACTGTGCGGCGGCACATCGAAGacgAGTATGATGCGTACATCATCGTGTCCTTCGTGAACGCCACCCTGGTCCTGTCCATCGGGGAGACTGTGGAGGAAGTGACAGACTCCGGCTTCCTGGGCACCACGCCCACCCTGTCCTGCTCCCTGCTGGGCGAGGACGCGCTGGTGCAGgttTATCCTGACGGTATCCGGCACATCCGTGCAGACAAGCGTGTGAACGAGTGGAAGACCCCGGGCAAGAAGACAATCGTGCGCTGTGCCGTCAACCAGAGGCAGGTGGTCATCGCGCTGACGGGCGGAGAGCTGGTCTATTTCGAGATGGACCCGTCGGGCCAGCTAAACGAGTACACTGAGCGGAAGGAGATGTCGGCGGACGTGGTGTGCATGAGCCTGGCCAACGTGCCGCCCGGGGAGCAGCGCTCTCGCTTCCTGGCCGTGGGGTTGGTGGACAACACAGTCAGGATCATCTCCCTCGACCCCTCGGATTGTCTGCAGCCCCTCAGCATGCAGGCGCTGCCGGCCCAACCCGAGTCTCTGTGCATCGTGGAGATGGGCGGCGTGGAGAAGCAGGACGAGCTGGGGGAGAAGGGCTCCATCGGCTTCCTCTATCTCAACATCGGCCtgcagAACGGTGTGTTGCTGCGGACCGTGCTGGACCCGGTGACCGGAGACCTGTCTGACACGCGGACTCGCTACCTGGGGTCGCGGCCCGTCAAACTCTTCCGTGTCAGGATGCAGGGACAGGAAGCGGTGTTGGCCATGTCCAGCCGCTCCTGGCTCAGCTACTCCTATCAGTCACGCTTCCACCTGACGCCCCTGTCCTACGAGACGCTGGAGTATGCCTCGGGGTTCGCCTCCGAGCAGTGCCCTGAGGGCATCGTGGCGATCTCCACCAACACACTGCGgATCTTGGCCCTGGAGAAGCTGGGCGCGGTGTTTAACCAGGTGGCGTTCCCGCTGCAGTACACTCCCCGCCGCTTCGTCATCCACCCCGAGACCAGCAACCTGGTCCTGATCGAGACCGACCACAACGCATACACCGAGGCCACCAAGGCCCAACGCAAGCAGCAGATGGCAGAGGAGATGGTGGAGGCGGCTGGAGAGGATGAGAGGGAGCTGGCAGCAGAGATGGCTGCAGCCTTCCTGAACGAGAACCTGCCCGAGGCGATCTTCGGGGCACCCAAGGCCGGCTCAGGCCAGTGGGCCTCACTGGTGCGGCTCATCAACCCCATCCAGGGCAACACACTGGACTTGGTGCAGCTGGAGCAGAATGAGGCAGCctttagTGTGGCCGTGTGCCGGTTTACCAGTGGTGGTGATGACTGGTACGTGGTGGTGGGTGTGGCTAGGGATCTCATTCTGAACCCACGCTCGGTTGGCGGTGGCTTCATCTACACCTATCGGCTTGGAGGGGGCGGGGAAAAGCTGGAGTTCATGCACAAGACCCCAGTGGAGGATGTTCCTGTGGCCATAGCCCCGTTCCAGGGCCGGATTctggtgggggtggggaagcTCCTGCGCATCTATGACCTGGGCAAGAGGAAACTGCTGCGCAAGTGTGAGAACAAGCACGTCCCCAACCTCATTACAGGCATCCACACGATGGGGCAGCGCGTTGTGGTGTCGGACGTACAGGAGAGCCTGTTCTGGGTGCGCTACAAACGCAACGAGAACCAGCTCATCATCTTTGCAGATGACACGCACCCCCGCTGGGTCACCACTGCCTGCCTGCTGGACTACGACACCATGGCCTCTGCCGACAAGTTCGGCAACATCAGCATCGTGCGTCTGCCCCCCAACACCAGTGATGATGTGGATGAGGACCCCACGGGGAACAAGGCCCTCTGGGACAGGGGGCTGCTCAACGGTGCCTCCCAGAAGGCAGAGGTCATAATGAACTACCACATTGGGGAGACGGTGCTGTCGCTGCAGAAGACCACGCTGATCCCGGGGGGCTCCGAGTCACTGGTCTACACCACCCTGTCCGGGGGCATCGGCATCCTGGTCCCCTTCACCTCCCATGAGGACCACGATTTCTTCCAGCACTTGGAGATGCACATGCGTTCAGAGTTCCCCCCCTTGTGTGGGCGGGACCACCTTAGCTTCCGGTCCTACTACTTCCCTGTCAAGAACGTTATTGACGGGGACCTGTGTGAGCAGTTCAACTCCATGGACCCCAACAAGCAGAAGAGTGTATCGGCAGAGCTGGACAGGACACCCCCTGAGGTCTCCAAGAAACTGGAGGACATCCGTACACGCTATGCCTTCTAG

Function

symbol description
sf3b3 Predicted to enable U2 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be part of U2 snRNP and U2-type precatalytic spliceosome. Predicted to be active in nucleus. Orthologous to human SF3B3 (splicing factor 3b subunit 3).

NR:

description
PREDICTED: splicing factor 3B subunit 3

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12830 SF3B3, SAP130, RSE1; splicing factor 3B subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020328 True 3654 mRNA 0.61 26 16534696 16548548

Neighbor

gene id symbol gene type direction distance location
AMCG00020324 NA coding downstream 55063 16474273 ~ 16479633 (-)
AMCG00020325 lonp2 coding downstream 61034 16472584 ~ 16473662 (-)
AMCG00020323 LOC107577405,LOC104961177 coding downstream 65409 16457579 ~ 16469287 (-)
AMCG00020317 NA coding downstream 437143 16088956 ~ 16097553 (-)
AMCG00020313 papd5 coding downstream 455991 16067413 ~ 16078705 (-)
AMCG00020329 NA coding upstream 9994 16558542 ~ 16569600 (-)
AMCG00020337 NA coding upstream 57068 16605616 ~ 16614656 (-)
AMCG00020333 NA coding upstream 76690 16625238 ~ 16631859 (-)
AMCG00020335 LOC107576748 coding upstream 92456 16641004 ~ 16644491 (-)
AMCG00020334 rspry1,LOC106560854 coding upstream 98714 16647262 ~ 16663094 (-)
G62475 NA non-coding downstream 53706 16480530 ~ 16480990 (-)
G62283 LOC107575789 non-coding downstream 1111122 15423155 ~ 15423574 (-)
G62191 NA non-coding downstream 1500620 15032135 ~ 15034076 (-)
G62143 NA non-coding downstream 1767133 14703511 ~ 14767563 (-)
G62066 NA non-coding downstream 2133394 14345297 ~ 14401302 (-)
G62580 NA non-coding upstream 120349 16668897 ~ 16669511 (-)
G62582 NA non-coding upstream 131308 16679856 ~ 16680624 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding upstream 348322 16896870 ~ 16923733 (-)
G62659 NA non-coding upstream 438771 16987319 ~ 16989284 (-)
G62660 NA non-coding upstream 441719 16990267 ~ 16990714 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 259123 16272451 ~ 16275573 (-)
G62415 NA other downstream 279577 16252788 ~ 16255119 (-)
G62409 NA other downstream 414543 16118989 ~ 16120153 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other downstream 431957 16098900 ~ 16102739 (-)
G62061 NA other downstream 2202289 14330522 ~ 14332407 (-)
AMCG00020336 NA other upstream 67775 16616323 ~ 16624970 (-)
G62618 NA other upstream 244318 16792866 ~ 16793167 (-)
AMCG00020346 nup93,LOC103368977 other upstream 246448 16794996 ~ 16817767 (-)
G62853 necab2 other upstream 1062116 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 1438633 17987181 ~ 18015862 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_04916607_04940299 SF3B3, SF3B3.L coding CI01000013 null 4916313 ~ 4940308 (+)