AMCG00020331 (st3gal2,LOC107686287,LOC106573711,LOC107672232)


Basic Information

Item Value
gene id AMCG00020331
gene name st3gal2,LOC107686287,LOC106573711,LOC107672232
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16582886 ~ 16604658 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020331
GCTGTTGTGGCCGGGGGGCTGGCAGGAGCCGGCGAATGGGACTGTGGCGGCCACGGCCAGTCACTGAAGCAGCAACGTGAGAGgggagggtggtggtggtggtggtggtggggtgcGGGCGGGGTCAGAAGTCAGACAGTGGGTGGGGTCAGGAGATCATTGGAGCTGAGGCCTGCTTGGGGTGGAGGGGTGGAGCGGGCCAGCCGGGGGGGGGCAGGTATGCGGTGCTCGCTGCGCATCTGGGTGCTGCTGGGGTCGCTGGCTCTGCTCTTCCTCACCTCGCTGCTCTTCTCCCTCTCGCTGCGGGGGGGCGCCGGCCTGCCCTACCTGGACCCCCCCGGCTGGGAAGACACCCACAGGGTCAAACTGGTGCCAAGTTACACTGGCATCCACCGGCTGGAGCCCCCAGGCAGCACCGTGCTGAAGACCTGCGCCTGCCGCCGCTGTGTGGGCGACCCGGGGCTGTCTAACTGGTTCGACGAGAACTACGACCCTGAAATCTCGCCTGTGTGGACCCGTGAGAACGTGCAGCTGCCGGCCGACGTCTACTACTGGTGGGTGatgcTGCAGCCCCAGTTCAAGCCCCACAATGTGCAGCAGGTCCTGACCCGGCTGTTCCAGGTGATCCCGGGTCAGAGCCCCTATGGCTCCTGGGACCCGTCTCGCTGCCAGCGTTGCGCCGTGGTGGGCAACTCGGGCAACCTGCGGGGCGCCAGCTACGGGCCCTTGATTGACGGGCACAATTTCATCATGAGGATTAACCTGGCGCCCACGCTGGGCTACGAGGAGGACGCGGGCAGCCGCACCACGCACCACTTCATGTATCCCGAGAGCGCCAAGAACCTGCCCACCAACGTCAGCTTCGTCCTGGTGCCCTTTAAGACCCTGGACCTGCTGTGGATCACCAGTGCCCTCTCCACCGGACAGATTCGCTTcaccTACGCCCCAGTGAAGCAATTTCTTCGTGTAGACAAGGACAAGGTGCAGATCTATAACCCTGCCTTCTTCAAGTACATCCATGACCGATGGACCCGCCACCACGGCCGCTATCCCTCCACTGGCATGCTGGTGCTGTTCTTCGCTCTGCACGTCTGTGATGAGgtgaACGTGTTTGGCTTCGGCGCTGACAGCCGGGGAAACTGGCACCACTACTGGGAGCAGAACCGCTATGCTGGCGAGTTTCGCAAGACGGGGGTCCACGACGCCGACTACGAGGCCCAGATCATCAGCTCCCTGGCCAAGGCTGGCAAGATCACCGTGTTCCCTGGGAAGTGAGGCTGGGGAGAGGCAGACGGGGAGTGGGAGGACAGGAGGAAGCTGTCGCCCTCCAGCCCAGATCTCAGCTCGCTCATTCCCGCACACTCTGACAGAgccactgccccacccaggtcCTTCCCTGTCTCTGTGGGAGGCCTGGGGAGCGGCAGGACAGGGTCTCCCCCCTACCTCTACCGCCTGCCTCTCCTCCTCCCACTCTGGGCGTGAGGAATAATGTGCCAGCTTGACAGAGAGTGTCACGTGCGCTGGGTCACTGGTACTGGagtccctgctgctgctgctgctgctgctttgcaTGGCCTTCCCCCCTCATCAGAGTGAAGGCCTGCCGCGCCCCCCCTCAGAGCCTCGGCTTTCTCAACGCTGGAGCTTTGCTCACTTGCCCATGACTACTGGACTGCCTGCACCATCTGGACTGAGTGACTGGCTGGGCTCCAGCATCCCTTGGGTCCAGTCTGTACTGATAAATACTCCAAAGGAGgggacacacacaccgatcCCTCCAATCCGGCCCAGTCTGTGCGGCCAATGAACTCTCTGAGGTTCCCCAGGGGGAGCAGCCAATAGCAACACAGTGCTCCTCCCTCTGTGGGCCGCGGTGGCTGCAGCAGCCTCTCCAGGTACGAGAACCCCCACTAGGTCCAGCGCAAAATGCCGCCACCAAGCACAGACACTAGGGGGAGCCCGACCACACTCGCTCTTTTCCAGTAGgtgtctctatgtgtgtgtccgTCACGTGTCAAAGTTGGCttttacagagctgtatttCGTCACGGTAGTCAGGGTGCTGTTattgcattctttcttttatcatttcttactcttttttttttttcactcatcATGGGTGGCTCAATACAATGCACCACCCTCTGCCACTCTCTGACCAGTAGAGCCACACAGAGCAGTGGAGTGGGAGGGATGCCAGAGGCCACTGTAGCTCAGCAGGTTTTCCTCCCCTTACAGtgggtactgaccactgcagtgATTATGCCACAGCACGCCTGTCATGGgccccaaaacaaacactgctgcTACCAGACAGTTCGGGAATTACACGTCTGCAGGTACTGCGGCTGATCGGCTACAGTAGCTGGGCATGCCAGGGCTCACTTTTACCCTGTCTGGACTGATCATGTGCTCCCCCTACTGGCTGTCAAGAAAGCAGCAACGGAGGGGGAAAAAGAAGGGGGATATCCTTTCCCCCACTTCTCAGTATCAGTTTgttcagtgttattatttaaggagtgtttttaatttcgcttctgattttgtatttctcCGGTATCCACGTTAGAACGTCCCTACCGGGAATCCCGACGCCCTGTCACCCATCAGGAGAATGCTAGGATGCTCGGTACGGTTCCGTTTTCCTGAGGCAGCCGAGAGAGGTGCTGGGGTGTCACTGaacactgcactgctgctgcGAGGCTCTTGAACGCTCTGTCCAGCCCCGCGTCAGACGTACAGCCAGCACTCACAGGGCTTGTCTCATTGTACATCACTGTAGCCGGATGATGTGTTTATTGTTACCgctgtattttgtattcctcGCTCTCTGACTCTGCATGGTTTCAGGGGAGTGTCCTGTCTTGAGCAGTGGGGATTCCTTTAGCCTATGCGTgcatatatgcgtgtgtgtgtgtttatgtgtgtgtgactataGGACTGCCCACAGCCAGGGTGTGACAGGTGTGATTATACTGTGGTAATATTATTTGTCTCTCTGGggcaaacataaataaataaataaatacatacatacatacatacatacatacatacatacatacatacatacagagcTAGCTTCCTTAACAGATCCGTGGGAGACTGTACagacaaagtgtgtgtgtgagtgtgtgcgcgtATCTTCATAGTTTTGCTTTGACAGTTCTACATTCAGCTCAGATCCTGTCCTCTCGGGGCCTGAGAATTTCATGACAAGTTCCTTGAGTGCCTTTGACTATATGGCTACTGATCTCCACACGCTGACGCCCAGCCCACATCCACAACACCACACCCCACatcccacacacacatgaacccccaccccactcctctggctgacacacacacacacacacacacactgcctgccAATGTTTTGCCTCTGGCCTtgtgagtgtttatttttattcagtgaTATCATCACCTCAGTAGTGCTCTCTGCTGCTACAtttaaattcttcttcttctggaCCAGAAATGATGGACTGGAGGCTTAATTATCTATATCAGGGGCATATCACTGCATGGCTGAGTGGCATTATATCATTAGCACCTCTACAGGCTGTGTTTCTGTAGCTGCTCTGGCTGTAAACTGCCCTCGTCCCTGCAGGCccgtatgtacacacacacaggcctgcaTAGTTCAAGTCCAGAGATTGATGTTTTGGGGGACAGTGGGAGGGAGGACTTGAATCTTGCTTGGGTCTGGCATGGACATGTGCTGCTGCAACACTGTGCATCTGGACCGGATCCCTGCTCGAGTGCCCACCCTGCTCCTCTCCACCCCAGAAGCAGACCTTGCCCTGGGGGCCCTGGAGGGAGCTTTGAGAGTGGAGAGAGGAGGGATCCGGGCAGGGAAAGTTCTGTGTTAGTTAGTTTCCTGGCAGTCTTACCTGCAGAAGTGTTTTATTACCCATCACCACTCTGTGCCCTTAAACACCAAACACCGGAAATctatcaatatatataattttgttatgTTGGATTTTATTGCAGCTtgtcctgcctgcctgcctgcagcTTCCCATACTGGGGACACGGGATCAGAGATGCCTGGGTCACCCCGGGTTCCTGTCCCTTGCAGCACAGATATCATTACACATGCACTGGGAATGCAGAGAGTGAACAATTTAGAAAACCATAGCTATAACCACCTGAATACTtaaaagttataataataaaatacgtAAAATGTGCTTGAACCCTCTGATATTAAATCTGCAGCAGCTTTCTCAGATGctacacagagaaagaaaactcaACCCCTTTTTCCTTATTAAAGATGTGCAATAATTCACCAAAGAGTATTATTTGCTTTCCCTTAAACGATGATGCTGCAATGTTGGCATCCGCTGCGGGCTGCATGTACAGCGGGATTTCTGCTGGACCAGTGTTTTCCGACCCCCCCCCACGTCACCCTCTCCGGAGGATAAGTTACTCACAACCCCCATCCACCTCAGGATGGCACCGCAACTGAAAACTCGTCTGGCCAAACCGACGTTTTGTAACACACTGGTACGCCACAAGCTCCAGACATGTGAAAGTCAAATCAACCGGCCAAACGACAAGTAACACAGGTTTCAGGCCAACCCAGGGTTGGGACCTTCGCAGCAGGACAGTGCGCAGGGGAGATGGGATGGCCATGCAGGCCATTCTCCTTCAGGTCCTCCTGAGCAGAGCGGTACAGCATGGACAAGAAACCTTTCCGAACCCATTGGTCACAAGCTATACACTCGTGCAAATACACGCGTGTACCGACAGAACCGACGGGACATATCCTCACAATATGACTTGATTTCAGTTACTACCACTATTacgatcattattattattattattactacaactGTATTTTCTCGTTTTATAACCAAGACTCTGTGCTATAAA
>TU78274
AGTAGCCCCTGCTACGGGTTGGTGGTATGTGGGGGTCTCCGGTTTAAGGGGGCTGCCATAAACGTCGGAGACTGGGCAGGGACAGGGGCTGAGACGTAGACGAGGAGCGAGCGATCTGACTCCGCCAGGGGCCGAGGGGAGAGCGCAGATCCGGATCCgaagaggtggagagagagaggaagaaagacggggagggagggagggagggagagatcaGAGCATCTGGACGCGCAGCGCGGAGAGGACCGGAGCGCACATCCTCTCTCTGCTGAATTTTAATGAACGTGTGCCGGACTGTACCGTCTCTATCTTCTGCCACAACACCAGACTCGGGCGCTGGAGAAACATATCTATCCATCTACTAGTGTActgcatacatatttatCCCAGGCAGTGAGCTAGAGTTAAGCAGAACCAGAGCTACACCGGGAACCAACAGCGTACCCAAGACAGacgggcaggcaggcaggcagagagacagagaggtgtGTGTGCTAGGCCTGTCAGCTGCGGAGGGCAAGGGATCCTGTGACACTCATTACTCACAACGCAGGACAGAGGaaggaagaggggggggggggggggggggggtgcagcgcacacagacagcagaggAGGATCCTGTCACTTCCCCCCCAACAATCAGATTGGCAGACACTGTCCTGTGCGGTGCTGTGGAGAGAGTGGCAGCGGGGGAGCAGCCGTCTCTGTCAGGGCTCAGGGAGACGGAAGTGTGGGTGTCGCAGGGCTGGCATCAGAGCTGGGGCAGTGTGCGCCCAGGGCAGACAGCTGCGGGAGGCCAGGCGTGGGCACCGGGGCATGCAGGCACAGCCTCAGCCTCCTTGGTCCCACACTGAGTCCGTCTGGCCTGACTGCCCACCACGAGCTGCCATGACAGGGAGAGAGCACACACAGGAGTAGGATCTGAGCAAACGCACGGTCACGGACATGGAACCAGGGCATGACCAGCCTTGCACTTCGTCTAAGGACTGCCTCCCTGGGACCGCGAGACAGCCGCCCACTCATCCTCTGCCcggctgcactgtgctgtagctGCGAccgtttgccttttttatttcattattattaattcatttatttatttcttactgattttttttttctggaagaaAGATGACGACTGAAAAATAATCTCAACAGTTGTCAGACTTAGTGGTTcggaagggagggaggaggaggagcaggaggaggagggaggaagaAAGGGGCGGTGAGATGGAACCAGTAACTTTTGCACTCGAGCCCCTGAGCGGCAGAACTGTTTCCCACTTGTAGGTGGAGCGCTCTCCTGTTTGCTTGGGACTCGACCAAACAGGTTAGGCTGCATCAGTATGTGGAATACAGTGTTCAGACACCCTGTGTGAGAGTACAGAGGCCTGCAGCACACAGGAAGTTACTGTGCAGTTCAACAGACTCTCCACACTACAGGACTGGGACGCAACTGTGTCTGttcgtgtttttgtttgtcacaGGGAGAGAGAACTCTGATCACAGGGTGAAGAGCCAATAGGAGGGCTGCATGATTACAGTGCGATTGTAAGCAGCCaatcagtgtgcagtgtgcgcTGCAGAACTGTGTCATAGCCGTTTGGCTACAGTCTCCACGTTGTGGACAGAGGCTGTTGTGGCCGGGGGGCTGGCAGGAGCCGGCGAATGGGACTGTGGCGGCCACGGCCAGTCACTGAAGCAGCAACGTGAGAGgggagggtggtggtggtggtgg

Function

symbol description
st3gal2 Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; fin; head; pleuroperitoneal region; and segmental plate. Orthologous to human ST3GAL2 (ST3 beta-galactoside alpha-2,3-sialyltransferase 2).

NR:

description
PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity molecular_function

KEGG:

id description
K03368 SIAT4B; beta-galactoside alpha-2,3-sialyltransferase (sialyltransferase 4B)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020331 True 4896 mRNA 0.54 6 16597556 16604658
TU78274 False 1744 lncRNA 0.57 2 16582886 16597660

Neighbor

gene id symbol gene type direction distance location
AMCG00020327 cog4,LOC107577202 coding upstream 25429 16550086 ~ 16557457 (+)
AMCG00020326 siah1,LOC106573709 coding upstream 130251 16450836 ~ 16452635 (+)
AMCG00020322 NA coding upstream 148829 16420323 ~ 16434057 (+)
AMCG00020321 cbln1,LOC106921425,LOC107090910,LOC106573707,LOC108250943 coding upstream 282901 16293494 ~ 16299985 (+)
AMCG00020320 LOC106560866,LOC107738740,LOC107686280,LOC107549643 coding upstream 308312 16254493 ~ 16274574 (+)
AMCG00020338 NA coding downstream 11758 16616416 ~ 16617243 (+)
AMCG00020330 NA coding downstream 29444 16634102 ~ 16640976 (+)
AMCG00020332 NA coding downstream 61484 16666142 ~ 16680624 (+)
AMCG00020341 bbs2 coding downstream 212925 16817583 ~ 16825446 (+)
AMCG00020349 NA coding downstream 222461 16827119 ~ 16828366 (+)
G62504 NA non-coding upstream 17697 16547736 ~ 16565189 (+)
G62494 NA non-coding upstream 47485 16533356 ~ 16535401 (+)
G62480 NA non-coding upstream 78063 16501784 ~ 16504823 (+)
G62432 NA non-coding upstream 94704 16415478 ~ 16488182 (+)
G62398 NA non-coding upstream 482076 16098986 ~ 16100810 (+)
G62564 NA non-coding downstream 40280 16644938 ~ 16646261 (+)
G62617 NA non-coding downstream 189006 16793664 ~ 16793880 (+)
G62654 NA non-coding downstream 382661 16987319 ~ 16989579 (+)
G62681 nudt21 non-coding downstream 425535 17030193 ~ 17046150 (+)
G62680 NA non-coding downstream 427159 17031817 ~ 17035498 (+)
AMCG00020281 slc12a4 other upstream 2110341 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 2350618 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 2631839 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 2697770 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 2710241 13863477 ~ 13872645 (+)
G62632 NA other downstream 209716 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 828984 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 854486 17459144 ~ 17471869 (+)
G62895 NA other downstream 1323670 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 1453900 18058558 ~ 18065789 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012738 st3gal2 coding NC_007129.7 CM002902.2 18612388 ~ 18631082 (+)