AMCG00020336


Basic Information

Item Value
gene id AMCG00020336
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16616323 ~ 16624970 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020336
aTGCAGCTGTCTTTAACAGTAACCACACAGCTGCTTGAAAAAGGGCCCCAGCAGGCAGGCGGGACAGAGACCTGCAAGCTCACACAGACGCTGTTGGATGCGGACACTGAGCTGCAGGGCTCAGAGCTGAGAGAGCTGGGGCTGTGTGCCACACGAACACGCCGAGCCACGGACATGACGGAGAACACGGATGTACTGCAACAAGTGGACCTGCAGTGCTGGTCCAATAACCACAGCCACCACACGGCGGAGGTGGACACGGAGCGGCTGCTGCTGCGTCGAGGGCAGCCCTTTACCCTGAGCCTCAGGGTGAACCCCCCGCCCCGGCTCACCCTCGTCCTGCACCTCGGGAAGGATGGGAACACTGTGATCAAGGTGTCTGACTCGTGGGGGTCGGGGAGTGGCTGGTGGTTCAGAAGCGAGTCTGGGCAGGACGAGCTGCTGCTGACCGTGCACAGCCCCCCCGACGCTCCGGTGGGACTGTACCATCTGACCGCTGTGATACTCGACTCGGACGACCTCATCCTGCAGAGCATGCCCCTTGGACAATTCCACCTGCTCTTCAACCCCTGGTGCAAAGATGACTTGGTGTATCTACCAGAAGAGGAGCAGCTCCAGGAGTACATCCTGAACGAGAGCGGGCTGCTGTACCAGGGCTCCTGGGACCAGATCTCTGCAATGCCCTGGGACTTCGGACAGTTCGAGAGGGATGTGGTGGATATTTGCTTCCAAATCCTGGACAAGTCCCCCGCGGCTCAGAGGAACCCGCAAACTGACGCTTTCCGCAGGAGCGACCCGGTGTACGTCAATGCCAATGATGACCTTGGCGTGGTGTCAGGCCGCTGGGACGGGGATTACTCTGATGGCGTGGCACCCACGCGCTGGTCGGGCAGCGTGCCTATCCTCCGGCAGTGGAGCCGCGGCGGGGCCCAGAGGGTGCGCTACGGGCAGTGCTGGGTCTTCTCAGGGGTCGCCTGCACCGTCCTGCGCTGTCTGGGTATCCCCACTCGCTGTGTCACCAACTACTCCTCCGCTCACGACACAGACGGCAACCTGACTGTGGACCTCTACTACAGTGAGCAGCTGGACAGCCTGCCGGGCGGCAAGAAGGATATGATCTGGAATTACCACTGCTGGGTCGAGTCCTGGATGGCGAGGCCAGACCTGCCCCCGGGGTACGACGGCTGGCAGGTGCTGGACCCCACCCCCCAGGAGAGGAGCAATGgaGTGTACTGCTGCGGGCCGTGCCCAGTTCGGGCGATCAAGGAGGGCGACGTGGAGGTGAAGTATGACGTCCCATTCGTGTTCTCAGAGGTCAACGCTGACCTGGTGTGCTGGGTCCTGCACGCGGACGGGCGGCGCTCCCAGGTGTCTCTGCAGCGCCACACAGTGGGCAGGAACATCAGCACCAAGAGCGTGTCTGGGGAGCAGAGGGAGGATCTCACCCAGCACTACAAATACCCTGAGGGCTCGGCAATGGAGAGGCTAGTGTACAAGAAGGCGGGCAGGAAGCTGTCTCTGCCAGACACCTCAGACAGGAAGCTGGAGCTGGGGATCCGGCATGCCCAGGCGGTGCACGGCACTGACTTCGATGTGCTGGTGGAGGTGACCAACCCGAGCGGACAGGACGCCCACGCACACCTCACCATCTCCGCGCTGGCTGTCACCTATAATGGCATCCACCTGGGCGAGTGCCACAGGAAGAGTGTCAGCCTGACCCTGCCCGCCAACATCGCCCACAGGGAGGTGCTGCGGCTACAGTATGAGCATTATGGGAATCGGCTATCCGAGCACCACTTGATCCGGGTCACAGCACTCCTGGAGCCCAACGACGGCCACGACATTGTCCTGCATGAGACCAACATCCCGCTCAGCGTCCCGCAGCTCACTGTGCAGTTGTTTGGAGAGGCTGTAGTGTCTCAGAAGCTGGTGGCCAAGATCACCTTTGTCAACCCGCTACCCATCACTTTGAAGGGGGGCGTGTTCACTGTGGAGGGGGCAGGACTCACACAGGCACAGGAAATACCAGCactGGGGGAGATCCGCCCAGGAGAGGAGGTGTCCATCAAGTTCTCCTTCAAACCCTTCAAGCCAGGCCCCCGAAAGCTGCTGGTGGACTTCGATACGGACCGGCTGAAAGATGTCAAAGGCTTTGCCAAAGTTATAGTGAGGGGCACAAATATGTGAATGGAGAAAGATGCACAcgcttttctttgtttctatATGAagatttaaagttatatataatatctataGAAATACACAATTACAGCCTTGGGGGATGTAGGTAATTTGctggaatatataaaaaaacagctttaatgAAATCTGGACTTCGATTATAGCTGTtggcaacaataataatgacagcTTGTTGGTGGTTATACAGTCTGGTACATGTGACAAATCTTTATGCACTGATTTATGAGCACGACCAGATTCCACACTGCAGATTATATTCTATATACAAAACCATGATAGAGCGGTCTTGATTTTATTATGTGTGGAGCTCTACTTACTAATATTCCCACAGTAGTCATAAACAAGGGCTGacatatacagctctagaaaaaatttagaccactgcattttttccttaaatcagcatctctacatgtatggcagccattcaattccattcatatttgtgtttggaatttgggagaaatgttgtcagtagtttatagaataaagcgaaattgatcattttatccaaacacatacctatacacagtaaaaccagagaaactgttAATGTTGCAGTGgtctccagagctgtatataggtTGAGTTACACTTGGGCCCCCATACATTGAAGTGTGTTGTGTAAATTACtcaaaactaaatgtttttagtgttttcCTCTAAAGTGGCTTTCTGTGAATAAATTCTATTTCAAGTAtaatttttaaaggaaaaaaatcgTGTTTTCTGTGGAAAAAACCCTGCAAAC
>TU78317
ttttaataacaaaagtAGAAATTGAAATTCAGCTGAGGTGCAACTGATAAaccatgaaaacaaagcaaagagaCTGTAGTCCATGTGAACATAGCAAAGCATGTGTTAAGATGGTTGACATAATATACACGGACACGTCCAACACGAAGGTCCCTACTATGTCCAGTTTCTAATGCCCTCACGCCTGGGCCGGAGGGGCTTTTCTTCGTACCGCCTTTAATAGAGTCTGCTGGATCACGGGGTACAGGCGGTGGCACCCCTCGATGCAGGCCCGCACCGCTTCCACCAAAGTGTCCTCCCCCATCTCGCCGTCCGACTGCAGCCCGGACACCTGGTTGAGACTGGGCAGCAGCGCCACACTCACCCGGCCCTGGTTGTCGCCGTACCCGGCCGCCCAGGCGCCGCTCTCCTCGGGGAAGGTGGGGTCCAGGAGGTAGGTGGGCCCGTCCTGTCTCAGAGCGCAGCCCAGGACCAGGTCGTACATCTCGATACCGGCGTCCGCCAGGGCCAGGGCCGCGCAAGTGACGGCGTGGGACAGAACCGAGCCGTCGTTCTCCAGCACCACCACGTTCACCTCCACCTGCGAGCGGGGGTATTTGTGCAGGCAGACCGCAGGCTGCAGGCTCTCCAGCAGGCCCAGCGACAGGTCCTTCTCCCCGCTGCCCTGGATCCAGGCGCCCCGTTTCTGGCAGGAGAAAGGGGCGAAGCGAAAGTCACAGACCAGCCTCCCGGTTTTCATGTCCACGTCGTCCTTCCTCTCGGTCTCCCGGGGCCCGTACACGGAGCAGATGAGCTTGGTGCTCCCGGCTTCGATGTAGGCAGACCCCTTGGCCTGGCTGACCAGCCCGCATCGTGCGAACATCGGCCGCACGTCCGCCTGTCCCCGCCGCCTGCCGTCCTCCCTGGCCTCCGACGGCGGAGCTGGTGTCTTGGTGGTCGGGGGGACGAACAGTAACGGGGACTGGGACTCGTCCGGACCCCGCACTCGTTTAGTGTCTACCGGCATGGCTGGCACATTGATCCACCATAGACACCCTAACACATCTCTGTCAGGCCGCgcatgtatacaaaatacacCAATTCAAACTGGCACCCTCCC
>TU78318
ttttaataacaaaagtAGAAATTGAAATTCAGCTGAGGTGCAACTGATAAaccatgaaaacaaagcaaagagaCTGTAGTCCATGTGAACATAGCAAAGCATGTGTTAAGATGGTTGACATAATATACACGGACACGTCCAACACGAAGGTCCCTACTATGTCCAGTTTCTAATGCCCTCACGCCTGGGCCGGAGGGGCTTTTCTTCGTACCGCCTTTAATAGAGTCTGCTGGATCACGGGGTACAGGCGGTGGCACCCCTCGATGCAGGCCCGCACCGCTTCCACCAAAGTGTCCTCCCCCATCTCGCCGTCCGACTGCAGCCCGGACACCTGGTTGAGACTGGGCAGCAGCGCCACACTCACCCGGCCCTGGTTGTCGCCGTACCCGGCCGCCCAGGCGCCGCTCTCCTCGGGGAAGGTGGGGTCCAGGAGGTAGGTGGGCCCGTCCTGTCTCAGAGCGCAGCCCAGGACCAGGTCGTACATCTCGATACCGGCGTCCGCCAGGGCCAGGGCCGCGCAAGTGACGGCGTGGGACAGAACCGAGCCGTCGTTCTCCAGCACCACCACGTTCACCTCCACCTGCGAGCGGGGGTATTTGTGCAGGCAGACCGCAGGCTGCAGGCTCTCCAGCAGGCCCAGCGACAGGTCCTTCTCCCCGCTGCCCTGGATCCAGGCGCCCCGTTTCTGGCAGGAGAAAGGGGCGAAGCGAAAGTCACAGACCAGCCTCCCGGTTTTCATGTCCACGTCGTCCTTCCTCTCGGTCTCCCGGGGCCCGTACACGGAGCAGATGAGCTTGGTGCTCCCGGCTTCGATGTAGGCAGACCCCTTGGCCTGGCTGACCAGCCCGCATCGTGCGAACATCGGCCGCACGTCCGCCTGTCCCCGCCGCCTGCCGTCCTCCCTGGCCTCCGACGGCGGAGCTGGTGTCTTGGTGGTCGGGGGGACGAACAGTAACGGGGACTGGGACTCGTCCGGACCCCGCACTCGTTTAGTGTCTACCGGCATGGCTGGCACATTGATCCACCAT
>TU78319
GCAAACTGGAGACCCTGTCCAAAAAGGCTCCAGGCATACACGAACACCTCGCCACAGCTCATCTGACATTTCTTTAGGTGTCCGTATGCAGCTGAACTGCTGGACTtgcacacaaaatataaattagtgAAAACTGCGTCaaagatggatttttttttttttaataacaaaagtAGAAATTGAAATTCAGCTGAGGTGCAACTGATAAaccatgaaaacaaagcaaagagaCTGTAGTCCATGTGAACATAGCAAAGCATGTGTTAAGATGGTTGACATAATATACACGGACACGTCCAACACGAAGGTCCCTACTATGTCCAGTTTCTAATGCCCTCACGCCTGGGCCGGAGGGGCTTTTCTTCGTACCGCCTTTAATAGAGTCTGCTGGATCACGGGGTACAGGCGGTGGCACCCCTCGATGCAGGCCCGCACCGCTTCCACCAAAGTGTCCTCCCCCATCTCGCCGTCCGACTGCAGCCCGGACACCTGGTTGAGACTGGGCAGCAGCGCCACACTCACCCGGCCCTGGTTGTCGCCGTACCCGGCCGCCCAGGCGCCGCTCTCCTCGGGGAAGGTGGGGTCCAGGAGGTAGGTGGGCCCGTCCTGTCTCAGAGCGCAGCCCAGGACCAGGTCGTACATCTCGATACCGGCGTCCGCCAGGGCCAGGGCCGCGCAAGTGACGGCGTGGGACAGAACCGAGCCGTCGTTCTCCAGCACCACCACGTTCACCTCCACCTGCGAGCGGGGGTATTTGTGCAGGCAGACCGCAGGCTGCAGGCTCTCCAGCAGGCCCAGCGACAGGTCCTTCTCCCCGCTGCCCTGGATCCAGGCGCCCCGTTTCTGGCAGGAGAAAGGGGCGAAGCGAAAGTCACAGACCAGCCTCCCGGTTTTCATGTCCACGTCGTCCTTCCTCTCGGTCTCCCGGGGCCCGTACACGGAGCAGATGAGCTTGGTGCTCCCGGCTTCGATGTAGGCAGACCCCTTGGCCTGGCTGACCAGCCCGCATCGTGCGAACATCGGCCGCACGTCCGCCTGTCCCCGCCGCCTGCCGTCCTCCCTGGCCTCCGACGGCGGAGCTGGTGTCTTGGTGGTCGGGGGGACGAACAGTAACGGGGACTGGGACTCGTCCGGACCCCGCACTCGTTTAGTGTCTACCGGCATGGCTGGCACATTGATCCACCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020336 True 2953 mRNA 0.54 14 16617574 16624970
TU78317 False 1099 lncRNA 0.61 1 16616323 16617421
TU78318 False 1028 lncRNA 0.62 1 16616394 16617421
TU78319 False 1186 lncRNA 0.59 1 16616394 16617579

Neighbor

gene id symbol gene type direction distance location
AMCG00020337 NA coding downstream 1667 16605616 ~ 16614656 (-)
AMCG00020329 NA coding downstream 46723 16558542 ~ 16569600 (-)
AMCG00020328 sf3b3 coding downstream 67775 16534696 ~ 16548548 (-)
AMCG00020324 NA coding downstream 136690 16474273 ~ 16479633 (-)
AMCG00020325 lonp2 coding downstream 142661 16472584 ~ 16473662 (-)
AMCG00020333 NA coding upstream 268 16625238 ~ 16631859 (-)
AMCG00020335 LOC107576748 coding upstream 16034 16641004 ~ 16644491 (-)
AMCG00020334 rspry1,LOC106560854 coding upstream 22292 16647262 ~ 16663094 (-)
AMCG00020340 NA coding upstream 58914 16683884 ~ 16714207 (-)
AMCG00020339 NA coding upstream 101608 16726578 ~ 16757369 (-)
G62475 NA non-coding downstream 135333 16480530 ~ 16480990 (-)
G62283 LOC107575789 non-coding downstream 1192749 15423155 ~ 15423574 (-)
G62191 NA non-coding downstream 1582247 15032135 ~ 15034076 (-)
G62143 NA non-coding downstream 1848760 14703511 ~ 14767563 (-)
G62066 NA non-coding downstream 2215021 14345297 ~ 14401302 (-)
G62580 NA non-coding upstream 43927 16668897 ~ 16669511 (-)
G62582 NA non-coding upstream 54886 16679856 ~ 16680624 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding upstream 271900 16896870 ~ 16923733 (-)
G62659 NA non-coding upstream 362349 16987319 ~ 16989284 (-)
G62660 NA non-coding upstream 365297 16990267 ~ 16990714 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 340750 16272451 ~ 16275573 (-)
G62415 NA other downstream 361204 16252788 ~ 16255119 (-)
G62409 NA other downstream 496170 16118989 ~ 16120153 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other downstream 513584 16098900 ~ 16102739 (-)
G62061 NA other downstream 2283916 14330522 ~ 14332407 (-)
G62618 NA other upstream 167896 16792866 ~ 16793167 (-)
AMCG00020346 nup93,LOC103368977 other upstream 170026 16794996 ~ 16817767 (-)
G62853 necab2 other upstream 985694 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 1362211 17987181 ~ 18015862 (-)
G62961 NA other upstream 1381198 18006168 ~ 18039960 (-)

Expression


Co-expression Network