AMCG00020339


Basic Information

Item Value
gene id AMCG00020339
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16726578 ~ 16757369 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020339
gtgttttttctgcaggGCTGTCGGGATGGAGGAGGTAGAGGAGCCGGATCTGGTGTCGGAGCTGCGGCTGGTCGGACCCCAGCTGGCGGAGGCGCTGTCCCGGGTGTCGGATGGGGATCTGGACAGGATCATGTGCCTGTTGCGCACGGCGGGGCAGCAGCAGCTCCGGCTCATCCCTGACAGGACGCGTCGGGTGTCCCAGATGGTGGACCTGTTCCTGGGCGAGACCGCCGCGACCTGCCGCCGCTTCATCCACGCCGTGTGCCTGTTCTGCGCGCTGCCCCTGGCGCTGGAGACGCAGCTGATGTCGGCGGCCGGAGAAGAACCaccagacagaaacagaaagcgTCGCCAAGAAGGAAGCTTCCCTCCTGTGCCAGAGAAGCACCCATGCATAGTCTCACCTGAAATGTACAAATCCACCATGAAGCGCCTGCTGTTGCAACGGTACCAAAGAGTCAGCCAGGGGGTCCGGCGGCTGGTGAGGCTGCATGAGACGTGTGTGAGCCTGGTCAACAGGAACACAGTGAAGCTGAAGGAGAGGGTGGACCGCTTGTGGGGGGACACCCCGGGACTGCAGGACTCTGATGATGGCGTTGATCGCGTGGTGAAAATAATGGACCTGCTGCAACCCTCCACTACCTCCCAGTCACGGGTCATTGTGCTGCTGGGCAGTGCAGGAACAGGCAAGACTCTGCTGATGCACTGTGTTGGCCACCATTGGGCACAGGGGGCCTTTGATTCATTCCAGTTCTTCTTCCTGTTTGAATTCCGACAGCTGAATTTAATCAAGAGGACCCTGTCTTTGCAGCAGCTGCTCTTTGAGTTCTTCCTCCAGCCCGAAGTTGGTGAGAGGGACTCTATGTTTGACGTCATATTGGCCAACCCCCGGAGCGTTTGCGTTGTGTTCGATGGCTACGACGAGTTCTGCTGTAAGTTCACAGCCCTTAGAAGGGACACGCCCGTAGACCCCCGGAGGCCCCTACACATGGCTGAGCTCTTCTCCAGCCTCTACACCGGGCGGATGCTGCAGGGGTGCACGCTCGTTGTGACCTGTCGGCCCAAGGACGTGATGGACTTGCCTCTGGGAGCTGTGGACGAGGTGGGGGAGGTGCCGGGATTCGACCACCGGCGCGTGCATGAGTACGCCCAGGACTACTTCAAGGACAGCCCGCACAGGGAGCAGGTGCTGGGCCATCTGATGAGCAGTAGGACTATTCTGAACATGTGCTATGTCCCAGCGCTGTGCTTCATCAGCTGCGTCTGCCTGGAGTACCTTCTGCGCCAGAGATCCCCACTGACTAGTCTCCCCCACACAATGACTCAGTTCTATATCCAGATCATCATGGCCTTCCTCAGCAGGAGGCAGGTGGGCCACCTCCCAGAGGGGCCAGGGCCACCGCCATCGCTGCTGCAGAGGTCCAGGCAGGAGATAGAGGAGCTGAGCCGGCTGGCCATGGAGGGGCTGGAGCAGAGCAACATCGTGTTCTACGCCCAGGACCTGCCCCCCGCTGTGCTGAAGTTTGCATCTGACTCTGGGTTTTTCTCAAGGTTCGAGGTCAAGAAGGAGGACGGCTCTGAGGGCATGGGCTGCGCCTTCGTCCACCTGACCATGCAGGAGTTCTTTGCCGCGCTGCACCTGATGACCAGCGAGGTCGTGCAGGAGGCCCAGCTGAAGAAGAAGTTCAACCTGAAGTCCCGCTGGACCACCAAGACTGACCCCAAGACAGTGTTCACGGACACTTATCACCTGTACGTGTCCGGCCTGGCCTCCCGAGACTGCGCCTCCTTCCTGGGCCAGCTGTCGCGGCACAGCGCAGCATGGGTGGAGAAGCGGCAGAGCGCCATCCTGAAGATCCTGCGCAGCCTGGCCACCGGCACTCTGACTGGGCCCAAGCTGGTGGAGCTGTGCCGTTGTGCCTACGAGACCCAGGACGACAACCTGGCCGCCTTGGTCGGCAACCGGTCCCGATATGAGCTGAGGAACTTCCGGATCTCCCCTGTGGACATGATCGCACTGGCCTTCGTCATCAACAACGCCAAGAAGCAGGTCTGCCTGGACATCGCTGGATGCTCTGTGGAGCCCGACTGCTTGGACATCCTGCCCACCTGTAACTACATAGACTCGCTAATCTTTCGGAGTCGGAAATATGATGACAGGTTTGCAGAAGCGCTGTCTGACATTCTTCCCAGAGTTGAACGTCTCCAGAAACTAGAGTTCGTCAGTGGGAGTATTGGAGAAGGGGGGGTGGCAAACCTGGCCCGAGCACTGCAGAGCTGTCCACACCTCACCGAGCTGAAtggaaCCAAAGAAGCAAAAGTCCTGTTTTACATGGATTCAGATACCCAGAGCTCTGCTGAGGCGCAACGCAGGCGTCGCACTGGTGCCGGACGCACACTCAGCCTTCTGAACTGCACTTTGACCCCTAAAGACATGAAGAACCTGTGTGAACTTCTGACCAGATGTCCAGGACTGTCTGATGTTAACCTGTCTGGGAACCTGCTGAAAGACCCCGCCTTCAGGGTGCTGGGGGACTTCCTGCCGCAGGTCAGCGTCTCGGGGCGGATCAGCATCTGCAACAACACCATCTCTGTGGAGGGGATGTGCTGCCTGGCCCGTGCTCTGACGCTGTGCCCCAGGACAGAGGCGCTCGAGATCAGTCTGCAGCAGGGCAGCCAGATCATTGTGAAGTTTGCAGGAGAACCACAGAAGGGTGGGGGCTATCCTGGAGTGGAAGACAGCACAGGCCAGCAACTTCCTGTGGTTTCTAAAAGACTCCAGCTGACTAACTGCAATATCCAGCCCGGACACCTGGACAGGCTGTTGAAAACACTGAAGGGCTGTGACAGCCTGGAGCTGCTAGAGGGCCTGAAGAAACTGCTGGACGCGCTGCCTACACTCCGAGGCATCAGAGAGATCGACGCTAGTGACGGCAAGGTGACGATGGAAGGTGTGATCTGGCTGGCCGACTCTCTGGGCAGCTGCAGAGACATGAGCGACGTTGACGCGAGCTGTGGAGGTTCAAAGAGGCTCATAATCAGGTTTCACAGGAGTGCCAGGCTGTGCAGCAGTGCCATCCAGTCGGCCGCCATGGACAAGCTGTGTGCGAGACTGACGAGATGCCTGAGTCTGTCTGAACTGGATTTTTCTGACAACAACCTGGATGAGGCGTCCATTGAGAAGCTTCTGAAGCACCTTCCACAGATGCAGGAACTGAAGCTGCTGAATATTAGCAACAGCAGGATATCTACAGATGGCGCCCTGCTGCTGGTCCGATCCCTCATAGACTGTGAGCGTGTCAGGGAAGTGGAGCTAAGACCCCAGGGCGAAGCTTTCATAAAGTTTGTGAAAGTAAAAGCAGAGCAAGCAACATGCAGGTTGAATCAGTACAACCTGGACAGGAAGAATGTGGAGAACCTGTCAGGCATCCTGGAGAAGTGCTCCCGGCTGGCTGAAGTGGACTTGTCCAGTAACGTACTGGAGGATGAGGGTGTGGGCTGCTTTCTGCAGTCCCTTCCCAGACTTCATATTTCAAGAGCTATCAATCTCAACAACAACCGCCTCAGTCAGCTGGGAGTGCTGTACCTGGTGAACTCGATGAGTGTCTGCCAGCGAGTTGTGGAGATCGAAGTGTGCTTGGGAACGGAGGAAAAGTCCCTGATTCGATTTATGCAAGATGAAGATGAACACCAAGGCGTCAGGAGTATTGTACAAGACAGCCACTCTGTGTATGAGACCAAAGCTCATTGTACAATAGCAAGAAGAATCAGccTCAGAGAATGCAGTTTCACCAAGGAGCATCTCGCAAAACTCGCTGACATTCTCGATAAGTGCGCCCAGTTAGTCAAACTAGAGGTCAACAGGAACACTCTCCACATCACGATGGGGAGCTGTCCACCATGCACAGAGCAGGAGAGGGACTTCCCAAGAGATGGGGGCCTGGGGGGACCGAGCTCCACGTCGGCGGTGAAGTCACTCAGCTTTGTGGACTGTGGACTGCAAGGACATCACCTGTCCTTCCTTCAGGAGGTCAGCCAACATTGTCCCCAGCTCCAGGAGTTAGATCTGTCCCACAACAGCATTGGCGCAGAAGGGGCTAAAACTTTGTTATCTGTCCTCCCCGCCTTCACACACTTGAAAAAGCTCAGCCTCGAGTCCAAGCAGACCACAGAGTGTGAGATCCACCTGCTGGCTATAGGACTGAACTGCTGTTCCAACATCCAGAGCTTGAACTTCTCTCACAACAAGATTGGCGATGAAGGGGCCAAGGCGCTGGCGAGAGTCCTCCCAACACTGCGACACCTGAAGGGCATAAAtttTTCCCATTGCTGTTGTCTGACGCCCATGGTAGGATTCCAGCTCGTCCAGGGGCTGTGCCAGTGCCCTGCCCTAGAGGAGCTCAACTTAGACTCTGTGCAGCTGGACGACAGGGGGATGGCCTGCCTGGCTGCTGGACTTGGGCGCATGGCGTCAGTGAAGAGGTTAACTCTGAACAAGATCACCAGCAGTCCAGAGGAAGGAAGCCAAGCAGTGCTGGGAGTGCTGGGCTCCATGCGGACGTGGCGTGGGATTGAGGAAATCGCTTTAAATGAGATCAGAATGGGTGATAAGGGCATACTGGAGCTGGCCTGCCACATCCCGGCCTGGGACCGGCTGAGGAAGATCAGCCTCTCCGAGAACAAGATCGGTGAAACCGGAGGGGTGAGACTGACGGAGGCCCTGGTCGGCTGCAGGTTACTCGAGGAGATCAACCTTGCGAGGAACAGCATCGGGGATACCACGGCGGGCAAGCTGTCTGAAGTGCTGCCGGCAATGCCACGCCTGAGAGTGCTGATCCTACAGTCCAATCGTATCGGTCCGATGGGGGGGGCGTGCCTGTCCCAAGTGTTTCCTGCTTGTAAAAACCTGGAAGAGATCAGCCTGGCAGAAAACATAATTGGGAGAGATGGAGCGGTGAGCCTCTCAGACGCCCTGGTCCAAATTAAGTCCTTGAAGAAACTTGATCTGAAGCTGACTGAGCTGAGCCCAGATGGGTCCGTGCGTCTGGCTGGCAGCCTCGGCCACTGTGTCCGTGTGGAGGAAGTCAATTTGTCGTGGAACAGCATAGGAGATGACAGTGCCCACAAACTAGCCGAGGTTCTGCCAAGGTGCCAGAGACTCAGGAGCCTGGAGTAA

Function

GO: NA

KEGG:

id description
K22615 NLRC5, NOD4; NLR family CARD domain containing 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020339 True 5176 mRNA 0.57 42 16726578 16757369

Neighbor

gene id symbol gene type direction distance location
AMCG00020340 NA coding downstream 12371 16683884 ~ 16714207 (-)
AMCG00020334 rspry1,LOC106560854 coding downstream 63484 16647262 ~ 16663094 (-)
AMCG00020335 LOC107576748 coding downstream 82087 16641004 ~ 16644491 (-)
AMCG00020333 NA coding downstream 94719 16625238 ~ 16631859 (-)
AMCG00020337 NA coding downstream 111922 16605616 ~ 16614656 (-)
AMCG00020345 NA coding upstream 4708 16762077 ~ 16768960 (-)
AMCG00020348 NA coding upstream 12953 16770322 ~ 16778622 (-)
AMCG00020347 NA coding upstream 21634 16779003 ~ 16791282 (-)
AMCG00020342 clg19h16orf70,LOC106573725,LOC106560845,LOC105892482,LOC103042166 coding upstream 71582 16828951 ~ 16841510 (-)
AMCG00020344 NA coding upstream 91511 16848880 ~ 16849657 (-)
G62582 NA non-coding downstream 45954 16679856 ~ 16680624 (-)
G62580 NA non-coding downstream 57067 16668897 ~ 16669511 (-)
G62475 NA non-coding downstream 245588 16480530 ~ 16480990 (-)
G62283 LOC107575789 non-coding downstream 1303004 15423155 ~ 15423574 (-)
G62191 NA non-coding downstream 1692502 15032135 ~ 15034076 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding upstream 139501 16896870 ~ 16923733 (-)
G62659 NA non-coding upstream 229950 16987319 ~ 16989284 (-)
G62660 NA non-coding upstream 232898 16990267 ~ 16990714 (-)
G62675 NA non-coding upstream 261421 17018790 ~ 17019552 (-)
G62715 NA non-coding upstream 362785 17120154 ~ 17175835 (-)
AMCG00020336 NA other downstream 101608 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 451005 16272451 ~ 16275573 (-)
G62415 NA other downstream 471459 16252788 ~ 16255119 (-)
G62409 NA other downstream 606425 16118989 ~ 16120153 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other downstream 623839 16098900 ~ 16102739 (-)
G62618 NA other upstream 35497 16792866 ~ 16793167 (-)
AMCG00020346 nup93,LOC103368977 other upstream 37627 16794996 ~ 16817767 (-)
G62853 necab2 other upstream 853295 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 1229812 17987181 ~ 18015862 (-)
G62961 NA other upstream 1248799 18006168 ~ 18039960 (-)

Expression


Co-expression Network