AMCG00020340


Basic Information

Item Value
gene id AMCG00020340
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16683884 ~ 16714207 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020340
ATGCACATGCTATACGGACTGAAACAGTGCTTCGGCATAAGAGGCTGTGGGAGAGAGGTGTCCCGGGACCACATGGCGTACACTCTGAGCCCTAGTCCAGGAGGGCCAATAGGGACTCAGCACTGTGTCACCAGGGTGGAGCTGTCAGTGAGCGGGGAAAACCTCCTGGACAGAGATGTCACCTCAAAGTCAGACCCCTTCTGCGTGCTGTTCCTAGAGGTGGAGGGGAAGTGGGTCGAGATTGGACGGACGGAGACGGCTGTGAACAATCTGAATCCTGTGTTCGGGGTGAAGTTCGTGATCGACTACCACTTTGAAGAGGTCCAGAAGCTGAAGTTTGCATTGTTTGACCAGGACAAGTCCAGCACCCAGTTGTACGAGCACGACTTCCTGGGGGAGTTCACCTGCACGTTGGGAGTGATCGTCTCTAGTAAGAAGCTATTGCGGCCCCTGGTCCTGGGCAACGGGAAGCCAGCTGGAAAGGGAACGATCACGGTTACAGCACAGGAATTGTCAGACAACAGAGTAATAAATCTGACGATGTGCGGGAGAAAGCTAGACAAAAAGGATTTCTTTGGCAAATCAGACCCCTACTTGGAGTTCCACAAGCAGGGCGATGACGGGCAGTGGATGCTGGTGCACAGGACAGAGGTTATAAAGAACACACTTGATCCTGTCTGGAAGCCGTTCAGCATGCCCCTGATCTCTCTGTGCAACGGTGATGTTGAAAGAAACGTCAAGGTAGAGTTTGAATGCATCAATCccaagaagcagaagaaaaagaagagctATAAGAACTCTGGGATCATCATCCTCAAGTCGTGTAAGgTTACAAGAGACTACTCGTTTTTGGACTACATCCTAGGAGGCTGTCAGCTCATGTTTACCGTGGGCATCGACTTCACAGCATCCAACGGGAACCCGCGGGATCCCTCCTCCCTCCATTACATCAACCCCATGGGGACCAATGAGTACCTGGCCGCTATTTGGGCCGTAGGGCAGATCATTCAGGACTACGACACaGACAAAATGTTTCCTGCTCTCGGTTTTGGAGCACAGCTGCCTCCTGACTGGAAGGTGTCACATGAGTTCGCCATTAACTTCGATCCCACCAATCCCTTCTGCTCAGGTGTGGGCGGGATTGCGCAGGCGTACTCGACCTGCCTGCCTCACGTCCGCTTCTACGGCCCGACCAACTTCTCCCCCATTATCAACCACGTCGCCCGCTTCGCCTCGCAGGCCGTGCAGCAACAGGTGGCCGCACAATACTTCATCCTGCTGATCATCACGGATGGAGTGATCAGCGACATGGATGAGACGCGGCACGCCATCGTCCAGGCCTCCAAGCTGCCGATGTCCATCATCATCGTGGGTGTCGGCAACGCGGACTTCGCTGCCATGGAGTTCCTGGATGGAGACAATCGCATCCTGCGCTCCTATACCGGGGAGGAGGCGGCCAGGGACATCGCACCGAAAGAAACGTTAGCCAAATCAGTGCTGGCGGAGCTGCCCCACCAAGTTACCCAGTACTTCAAGCAGAGGAACCTGACCCCCAGTAGTGCCGAGCCAGAGTAACCTGACACCCTCCTCAAGAACTTTGCATGTTTGCCAAAATCTTTTCATTGTTTACAAATCAAAAGACGAcgaatcaaaaaaaaaaaaaaaactgcatggAAGTAATTTTTATTTGCCAtgtctgatttttttaaactacctTCTTAAACTGAATGCCAGACTTTTAGAAGACAACTTTGGGTGCAGGCACTATAACAACTAACACTACGCAGGGCCCAGACACTTTTAGGCCGGGGGCGTGGGAGGAAAAACTATTGAAAAAGTATTGAATGTACCTTTGTACTTAAGTTCtgtatgattttattgttttttttttaaaggttatattaatgtttaaacacattttaagtatCTTATGTAGTCAGTGACTTGTAATCTGTGATACAAAAAAGTACTTTTGTCCAGTTCATATGTTGGCTATTTTATACAGTTGACTTGTAATTTTGTCATACTCAGGTTTATCAGTCAATAAACTTTTAACACAACGGAC

Function

GO: NA

KEGG:

id description
K24524 CPNE1_2_3; copine 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020340 True 2065 mRNA 0.49 15 16683884 16714207

Neighbor

gene id symbol gene type direction distance location
AMCG00020334 rspry1,LOC106560854 coding downstream 20790 16647262 ~ 16663094 (-)
AMCG00020335 LOC107576748 coding downstream 39393 16641004 ~ 16644491 (-)
AMCG00020333 NA coding downstream 52025 16625238 ~ 16631859 (-)
AMCG00020337 NA coding downstream 69228 16605616 ~ 16614656 (-)
AMCG00020329 NA coding downstream 114284 16558542 ~ 16569600 (-)
AMCG00020339 NA coding upstream 12371 16726578 ~ 16757369 (-)
AMCG00020345 NA coding upstream 47870 16762077 ~ 16768960 (-)
AMCG00020348 NA coding upstream 56115 16770322 ~ 16778622 (-)
AMCG00020347 NA coding upstream 64796 16779003 ~ 16791282 (-)
AMCG00020342 clg19h16orf70,LOC106573725,LOC106560845,LOC105892482,LOC103042166 coding upstream 114744 16828951 ~ 16841510 (-)
G62582 NA non-coding downstream 3260 16679856 ~ 16680624 (-)
G62580 NA non-coding downstream 14373 16668897 ~ 16669511 (-)
G62475 NA non-coding downstream 202894 16480530 ~ 16480990 (-)
G62283 LOC107575789 non-coding downstream 1260310 15423155 ~ 15423574 (-)
G62191 NA non-coding downstream 1649808 15032135 ~ 15034076 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding upstream 182663 16896870 ~ 16923733 (-)
G62659 NA non-coding upstream 273112 16987319 ~ 16989284 (-)
G62660 NA non-coding upstream 276060 16990267 ~ 16990714 (-)
G62675 NA non-coding upstream 304583 17018790 ~ 17019552 (-)
G62715 NA non-coding upstream 405947 17120154 ~ 17175835 (-)
AMCG00020336 NA other downstream 58914 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 408311 16272451 ~ 16275573 (-)
G62415 NA other downstream 428765 16252788 ~ 16255119 (-)
G62409 NA other downstream 563731 16118989 ~ 16120153 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other downstream 581145 16098900 ~ 16102739 (-)
G62618 NA other upstream 78659 16792866 ~ 16793167 (-)
AMCG00020346 nup93,LOC103368977 other upstream 80789 16794996 ~ 16817767 (-)
G62853 necab2 other upstream 896457 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 1272974 17987181 ~ 18015862 (-)
G62961 NA other upstream 1291961 18006168 ~ 18039960 (-)

Expression


Co-expression Network