AMCG00020341 (bbs2)


Basic Information

Item Value
gene id AMCG00020341
gene name bbs2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16817583 ~ 16825446 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020341
ATGGCGCTGGGATGGGACTGGGAGGGGTGGGCGTCCTGGCACCGCCACCGTGCGCAGCCGGGTGACGTCAGCGCGCTCCCAGCCGAGCCCGCACGCAGCCGCTCGCTTCCCCGGATGTTCGTGTCTCCGCCGAGGAAGCCGCCGTCTCACCTGCAAACGAGGAGCTCGTTAAACCACAAGATCAACCCCTGCATGGTGACGGTGGGCAAGTTTGATGGAGTGCACCCGTGTCTCACAGCTGCCACGCAGGCAGGAAAGGTCTTCATCCACAACCCCCACAGCAGGGGCCAGCGTCTCTCCTCCAGTCGGCTGAGCCACAGCACGCAGGACTCAGACATCTCCCTGCTCAACATCAACCAAGCGGTGAGCTGCCTGACCGCTGGCACGCTCGCCCCCGACAGCGCCTGTGACTCCCTGCTGGTGGGCTCCCAGACCAACCTGCTCGCCTATGACGTGCACAACAACACGGACATTTTCTACAGGGAGGTGACAGATGGAGCCAACGCCATCGTGCTGGGGGAGCTGGGCGACATGCCCTCCCCGCTCGCCGTCATTGGGGGAAACTGCGCCCTGCAAGGTTTTGATCACCGGGGCAATGATCTCTTCTGGACGGTGACGGGAGATAACGTGCGGTCGCTGGTGCTCTGTGACTTCACCGGGGATGGAAAAAATGAGCTCCTCGTTGGTTCAGAAGACTTTGACATTCGAGTGTTCAAAGAAGATGAACTACTGGTGGAGATCACAGAGAACGAGaCCGTAACGTCGCTGTGCCGCATGCACGGCAGCAGGTTTGGATACGCTCTGGCGAACGGCACGGTGGGAGTGTACGACAGGACTGCCCGCTACTGGAGGATCAAGTCTAAAAACCACGCCATGAGCATCCACGCATTCGACCTGAACGCAGATGGCGTCGTCGAGCTCATCACGGGCTGGTCCAATGGAAAGATCGACGCCCGCAGCGACCGCACTGGCGAAGTAATCTTCAAAGAcaccttctcctcctctgtgGCGGGTGTGGTGGAGGGGGACTACAGGATGGATGGGCAGGCCCAGTTGATCTGCACCTCTGTGGAGGGAGAAGTGCGGGGGTATTTGCCTGCCAGTAAAGAGATGAAGGGGAACCTGATGGATGCGAGTGTGGACCAGGACCTCATTCGAGAGCTGAGCCAGCGCAAACAGAacctgctgctggagctgcgGAACTACGAGGAAAACTCAAAGGCTGCAGCGGGAGGCCCAGCCAGCGATGTGGACACACAGATGGGGGTGATTCCAGCCAACACGCAGCTCCAAACAGCTCTCTCTGTGAAGGCCGGCAGCGACAGCCAGCGTCCTCACATTGAACTCAAGATTTCAACTCCCAATGAGACCATTATCCGAGCTGTGCTGATCTTTGCTGAGGGGATATTTGAGGGTGAAAGCCACGTGGTCCACCCCAGCCCACAGAACCTGTCGGGCTGCGTCCGCATCCCCATCACTCTGCCCAAAGACATCCCTGTGGACTTGCACATCAAGGCCTTCGTGGGCAGCAAGAACAGCACTCAGTTTCACGTGTTTGAGATAACCAGGCAGCTGCCACGCTTCTCCATGTATGACCTGTGCAAAGAAGACCCAGGCCCCAGACCAGCAGGCAGGGTCACCTTTGCCATCAATGACCGACCACAGAGGGTGATAATGTGGTTGAACCAGAACTTCCTGCTCCCAACAGGCATTGAGAGCCCCGACGTGTGCTTCACCTCGCTGCGGGGTGGTGGGCTGCTCTACATTGCCATGCTGCCGAACGGACAGatcaCACTGAATACTGATGACATCGACCTAGCAGGTGACCTTGTCCAGTCTCTGGCCTCTTTCCTGGCCATAGACGACCTGCAGGTGGAGGCCGACTTCCCGGAATATTTTGAGGAGGTGCGGGTGACTCTGGGTCAGGTCGACGACTACCATTCGGTCCATCAGAAGCTGACCGCAGTGATGGCTGACCACTCCAACCTCATCCGCAACATGCTGGTCCAGGCGGAGGATGCTCGTCTGATGGGTGAAATGAGGACCATGAAGAAGAGGTATATCGATCTGTATGACTTGAACCGAGACTTGATCAACGAGTACAAGATCCGCTCCAACAACCACAACGCGCTTCTGAACTGCCTGAAGTCTGTGAATCAGGCGATCCAGAGGGCAGGCCGCCTGCGAGTCGGGAAGCCAAAGAACCAGGTGATCAGCGCCTGCCGAGACGCCATCAAGAACAACAACGTGGGTGCTCTCTTCAAGATCATGCGGGCCGGGACCCCCTCCTCCTGAGACTGGGGACACTGGGGACACGATCACCCACACTGGTCAGACTGGTCCCAGTAGCCATAGACTCCATGGACCATAAATAAAAGTGCACAAGGAAcgggaacaaaaaaaacaaaacaaccttgAGCATTATTACAAGCACTTCAATCACACAGGTCTTAACGCGAAATACTGGCAAGGGACTGTGATCCAGGGCTTTACAGTCGTCTCTTCAGAGTCCTGATGACAGTCATCCTCTATAGAGACGTGTGTCTGGAGTGTGAATATGTGCAGTCAATGTCCTTGTTGTGTTGTAGccaaagaaatgtataaaagtggaaaaaaatatacatgtaaaatagGTTGGCGTTGCTGTAActacataaaaatgtacattttttatagcttgtaaaatagaaatgtttttgtgcctgtataaatattatttattaattgaattaaaaatacagtatactgGA

Function

symbol description
bbs2 Acts upstream of or within several processes, including Kupffer's vesicle development; cilium assembly; and establishment of pigment granule localization. Predicted to be located in ciliary membrane; cytoplasm; and cytoskeleton. Predicted to be part of BBSome. Predicted to be active in several cellular components, including ciliary basal body; motile cilium; and neuron projection. Is expressed in retina and retinal photoreceptor layer. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 2; obesity; and retinitis pigmentosa 74. Orthologous to human BBS2 (Bardet-Biedl syndrome 2).

NR:

description
PREDICTED: Bardet-Biedl syndrome 2 protein

GO:

id name namespace
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0034464 BBSome cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0060170 ciliary membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16747 BBS2; Bardet-Biedl syndrome 2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020341 True 2750 mRNA 0.55 18 16817583 16825446

Neighbor

gene id symbol gene type direction distance location
AMCG00020332 NA coding upstream 136959 16666142 ~ 16680624 (+)
AMCG00020330 NA coding upstream 176607 16634102 ~ 16640976 (+)
AMCG00020338 NA coding upstream 200340 16616416 ~ 16617243 (+)
AMCG00020327 cog4,LOC107577202 coding upstream 260126 16550086 ~ 16557457 (+)
AMCG00020326 siah1,LOC106573709 coding upstream 364948 16450836 ~ 16452635 (+)
AMCG00020349 NA coding downstream 1673 16827119 ~ 16828366 (+)
AMCG00020352 NA coding downstream 71571 16897017 ~ 16924481 (+)
AMCG00020351 gnao1,LOC103367675,LOC108264367 coding downstream 140825 16966271 ~ 16979660 (+)
AMCG00020350 gnao1a,LOC100693875,LOC105926579,LOC108264367,LOC103138895,LOC106939917 coding downstream 159141 16984587 ~ 16987141 (+)
AMCG00020353 hsf4,LOC106560841,LOC106573731 coding downstream 178472 17003918 ~ 17019277 (+)
G62617 NA non-coding upstream 23703 16793664 ~ 16793880 (+)
G62564 NA non-coding upstream 171322 16644938 ~ 16646261 (+)
G62504 NA non-coding upstream 252394 16547736 ~ 16565189 (+)
G62494 NA non-coding upstream 282182 16533356 ~ 16535401 (+)
G62480 NA non-coding upstream 312760 16501784 ~ 16504823 (+)
G62654 NA non-coding downstream 161873 16987319 ~ 16989579 (+)
G62681 nudt21 non-coding downstream 204747 17030193 ~ 17046150 (+)
G62680 NA non-coding downstream 206371 17031817 ~ 17035498 (+)
G62781 NA non-coding downstream 578939 17404385 ~ 17503263 (+)
G62909 NA non-coding downstream 1128877 17954323 ~ 17955274 (+)
G62632 NA other upstream 1726 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 212925 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 2345038 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 2585315 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 2866536 13948426 ~ 13951047 (+)
AMCG00020370 NA other downstream 608196 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 633698 17459144 ~ 17471869 (+)
G62895 NA other downstream 1102882 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 1233112 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 1242341 18067787 ~ 18072051 (+)

Expression


Co-expression Network