AMCG00020345


Basic Information

Item Value
gene id AMCG00020345
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16762077 ~ 16768960 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020345
CCCGGTGCCGAGAAACATGAGCCTTTGCAGCCGCCCCCCGACCCGGGGGAGAGGGGGCTGCACGTCACATTTCCTCTGCGGAGGAGGGCTCCCAGCGTAGAGGcccctgtctgtgtgctgtgctctggGCTGGGTCAGTCAGCTGCTGGGTGCGTCTTGTGCATTGTAGAGAAGATGTTCCCCATCGTGTTGCTGTGGTGCTTCGCCGGTATGTGTCTGGCTTGTCTGGACAACCAGGATGCCGCCTTTAAAGCCACAGGGATCGCCTGCAGGATCACCAAGCCGGCCGCCCTTGTGTTGAATGAACAGACCACTAATGTCATCCAGGCTGCGTTTCAGCATGCCAGGTACCCTGAcatgaaaggagaaaaatacaTCCTGTTCATTGGGAAGGTTTACTACGGTTTAAACAATTTGGAGATCCACAACCTCTCAATTGGAAAGAGTGAAGTGGAGCTGAGGCAGGACAACGACGTGCTGATTGACATTGCAAGCATCAGTGTCACCTTCAATGGCACTCTAAAGTATGGTTATGGAAACTGGCTGTTTGACATGGGGTCGTTTGTGGATTTTGAATTGGAATCTCACGTGGATCTCAAAATTCCAACCGATCTGTACTGCAGTAATGACCGGGTTGCTGCAGACACCACTGGCTGCTCTATCAACTTCcacaagctgcagctgcacctCCAGGGGGACCGGCAGCCAGGATGGATAAAGAGAATGTTTACAGATTTTGTGATGTTTACAGTTAAAAGGACCGTCGGTAGGCAGATCTGCAGGGAAATTAACAAGGCGGCGGATATCCTGGCGGAATTCATCCAGCAGCGGGCAGAGCTATTCCTGAGCGATGGGGATATAGGGGTAGACATCACCCTCACGGCCTCCCCTAAGTTGACCGACCACTACATCGAGTCTTACCACAAGGGAGTGGCCAGGGCCATGAACATCACGGTGCCCATTGTTGACTCTGGGTTCTGCCCCACGCTGCTGACCGAGCATCGGATGCTGTACTTCTGGATCTCAGACCAGGTGCTGCAGGGGCTGGTGTCCTTCGCTCACCAGGGCGGGCGCTTCTCTCGCTCCGTCGTCGGCCAGGAGCTGAAGgATCTTTTCCACGTGAATCTGGACGCTACCACGCCGCAGCTCGTGAGCCAGGGCACCAGTGTCAGGACCGTCGCTGCTGTAGAGCTGAAAAGCAGCTCCAGTGACCCCGAGCCATCCCTGCTCTTCCACACGGATGAAGACGTGGATGTGGAGTACCTGAAGGAGGTGGTACGAAAGATTGGCATCCCAAAAGTGGTGTCCGATCTCGAACCCGGGTTGACCAAAATGATGGATTCTCACGGACTACACCTGTTTGATATCATCAATCCTGAGGTTATATCACAACAGGGCTACGTCGTTGTCCAGCTGGACTTTGGTTTTCCTCATCATTTGCTGGTGGAATTTCTCCAAAAAACTCTGCAGAGTAGTGCAGCCTCCAGCACAGCAGAAGAAAACTAGCGTTGATTTACCCCTGAGACACAACAACAGTGCTTTAACTGAAAGGACTGGactgcaaagaaatataaacatactgtatattcttttcttcttgtttgtctcttttaaaacaatgtctcaactaattaaaagccattttgttttatctgctGGTCCTTTTcttatgggttttgtttttgttttatcctgaTATTCCATATCACAGTGGCAGAGACCCATGTGTTAAACCCAGacaaaattgtattgtttgtgttaaaGTGGCAGAGAATGCTGCATCTACATTTGTAATACAGTTGCTGGTGTAACTTATAGTCAGCTTGTTTTGCCAGAGAGTGAATATGTATTGACTAAATCTTTATAAATTGTGTATCTAAAATATCTATTGCGTACAAACCATATCAATCTATTTTTATTGTCATCTGTTGCgattaaaaacatattgtcTGCAAG

Function

GO: NA

KEGG:

id description
K16835 CETP; cholesteryl ester transfer protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020345 True 1956 mRNA 0.49 14 16762077 16768960

Neighbor

gene id symbol gene type direction distance location
AMCG00020339 NA coding downstream 4708 16726578 ~ 16757369 (-)
AMCG00020340 NA coding downstream 47870 16683884 ~ 16714207 (-)
AMCG00020334 rspry1,LOC106560854 coding downstream 98983 16647262 ~ 16663094 (-)
AMCG00020335 LOC107576748 coding downstream 117586 16641004 ~ 16644491 (-)
AMCG00020333 NA coding downstream 130218 16625238 ~ 16631859 (-)
AMCG00020348 NA coding upstream 1362 16770322 ~ 16778622 (-)
AMCG00020347 NA coding upstream 10043 16779003 ~ 16791282 (-)
AMCG00020342 clg19h16orf70,LOC106573725,LOC106560845,LOC105892482,LOC103042166 coding upstream 59991 16828951 ~ 16841510 (-)
AMCG00020344 NA coding upstream 79920 16848880 ~ 16849657 (-)
AMCG00020343 cbfb,LOC107715607 coding upstream 98272 16867232 ~ 16870178 (-)
G62582 NA non-coding downstream 81453 16679856 ~ 16680624 (-)
G62580 NA non-coding downstream 92566 16668897 ~ 16669511 (-)
G62475 NA non-coding downstream 281087 16480530 ~ 16480990 (-)
G62283 LOC107575789 non-coding downstream 1338503 15423155 ~ 15423574 (-)
G62191 NA non-coding downstream 1728001 15032135 ~ 15034076 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding upstream 127910 16896870 ~ 16923733 (-)
G62659 NA non-coding upstream 218359 16987319 ~ 16989284 (-)
G62660 NA non-coding upstream 221307 16990267 ~ 16990714 (-)
G62675 NA non-coding upstream 249830 17018790 ~ 17019552 (-)
G62715 NA non-coding upstream 351194 17120154 ~ 17175835 (-)
AMCG00020336 NA other downstream 137107 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 486504 16272451 ~ 16275573 (-)
G62415 NA other downstream 506958 16252788 ~ 16255119 (-)
G62409 NA other downstream 641924 16118989 ~ 16120153 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other downstream 659338 16098900 ~ 16102739 (-)
G62618 NA other upstream 23906 16792866 ~ 16793167 (-)
AMCG00020346 nup93,LOC103368977 other upstream 26036 16794996 ~ 16817767 (-)
G62853 necab2 other upstream 841704 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 1218221 17987181 ~ 18015862 (-)
G62961 NA other upstream 1237208 18006168 ~ 18039960 (-)

Expression


Co-expression Network