AMCG00020346 (nup93,LOC103368977)


Basic Information

Item Value
gene id AMCG00020346
gene name nup93,LOC103368977
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16794996 ~ 16817767 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020346
GCACAAGCGGCCCTTACCGAGCTCCTCGTTTGCAGGACATTTTGCACACTGGGCGCCTGGGGTGTTGTGCAAAGCCGTGTGCACAGCCGGCCCTCATTGAGCGTGTGTGCGTTTTCGCTTTGCACCCGGTTTCGCCCTGTGAGAGTCGCTATAAATACACAGCAGCGCGGCTGCAGAGTACACACTTCACCCGCACACGActgcatcaaaataaaataaaagaagggaagaaaaaatgGATCCAAAATCCTGCGCATGCTCAAAGACCGGGTCTTGTGACTGCGGGGAGAGCTGCAAGTGCGTGGACTGCAAATGCCAGGGCTGCTGCAAGAAGAAGAgctgctgctcctgctgctcgGCCGGCTGCAGTAAGTGCGCGTCCGGCTGCGTGTGCAAGGGGCAGACCTGCGACACCAGCTGCTGCAAGCGCAGGGGCTTATGGGAGCTGTGTCGTCCAATGAAAGTGCAGCTACGGAAGAGCCGGGAGGAATGTGCGGGCTGTGCGATGGACGGGGAGGGCTTCGgggagctgctgcagcaggCCGAGCAGCTGGCGGCGGAGACGGAGGCAATCTCGGAACTGCCCCATGTGGAGAGGAACCTGCAGGAGATCCAGCAGGCCGGAGAGAGGCTCCGGTCACGCACCCTGACCCGCACCTCACAGGAGACGGCTGATGTGAAGGCctcTATTCTGTTGGGCTCCAGAGGACTGGATATTTTCCACATCTCCCAGCGGTTGGAAAGCTTGAGCGCAGCAACGACTTTTGAACCTTTGGAGCCAGTGAAGGACACAGATATACAGGGCTTCCTGAAGAACGAGCGAGACAATGCGCTGCTGTCAGCCATCGAGGAGTCGCGGCGGAGGacATTCCTGCTGGCGGAGGAGTATCACCGCGAGTCGATGCTTGTGCAGTGGGAGCAGGTGAAACAGCGGGTCCTGCACACCCTGCTGGCCGCTGGGGAGGATGCACTCGACTTCAGCCAGGAGGCAGAGCCCAGCTTCGTGAGTGAAGTGGGGGCTCCTGGCCGCAGTGCCCTGGACAATGTGGAGATGGCCTATGCGAGACAGATTTACGCCTTCAACGAGAAGATCGTGAGCGGGCATCTGCATCCCAACCTGGGGGATTTGTGTGCCTCCGTTGCCGAAAGCCTGGATGACAAGAACGTGATGGACATGTGGACAATGGTGAAACAGATGACCGACGTCCTGCTGGTCCCGGCCAAAGAAACCCTCAAGAGCCGCATTGCTGTGGAAATGGAGATGGGCTTCGTCAGGCAGGCGCTGCAGTTCCTGGAAAACAGCTACAAGACCTACACCATGGTGACGGTGTCTGGGAACCTGTACCAGGCCCAGCTGGGTGGCGTGCCGGGCACTTATCAGCTGGTCCACAGCTTCCTCAACATCAAGCTGCCAGGGCCCATGCCAGGAATGCAGGATGGGGAGGTGGAGGGGCACCCAGTGTGGGCTCTCGTATACTACTGCCTGCGCTGTGGAGACCTGTCCGCTGCCATGCAGGTGGTGAACCGAGCGCAGCACCAGCTGGGCGAGTTCAAGAACTGGTTCCAGGAGTACATGAACAGCCCTGACCGCCGGCTGGCCCCCACCACGGAGAACAAGCTGCGGCTGCATTACAGACGGGTCCTGCGGAACAGCGCTGACCCGTACAAGCGAGCCGTGTACTGTCTGATTGGCAAGTGCGACATCGCTGACAACCACGGGGAGGTGGCCGACAAGACCGAGGACTACCTGTGGCTCAAGCTCAACCAGGTGTGTTTTGAGGACGACACCAGCAGCTCCCCCCAGGACAGGCTGACGCTGCCCCAGCTGCAGAAACAGCTGCTGGAGGACTATGGGGAGTCGCACTTTGCGGCCAACCAGCAGCCCTTACTGTACTTCCAGGTGCTGTTCCTGACTGCGCAGTTCGAGGCGGCCGTGGCGTTCCTCTTCCGGGTGGAGCGTCTGCGCAGTCATGCCGTGCACGTGGCCCTGGTGCTGTACGAGCTGCGACTGCTGCTCAAGTCCTCGGGGCAGAGCGCCCAGCTGTAACATCTTTCTATTGCAGTGAGTCAGGTGCCTGGGGACCCCCCCATGATTAGACGGCTCAATTTCATCCGCTTGCTGATGCTCTACACACGCAAGTTTGAGTCCACGGACCCTAGAGAAGCTCTGCAGTACTTCTATTTCCTGAGGAATGAGAAGGACAGTCAGGGGGAGAGCATGTTCCTGCGCTGTGTCAGTGAGCTGGTGATCGAGAGCCGGGAGtTTGACATGCTGTTAGGTCGGCTGGAGAAGGACGGCAGCAGAAAGCCTGGAGTCATAGATAAATTTGCCGGAGACACCACAGCCATTATAAGCAAAGTTGCGCTTGAAGCCGAGAACAAGGGGCTGTTTGAGGAGGCTGTGAAGCTGTACGAGCTGGCCAAGAATCCCGACAAGGTCTTGGAGCTGATGAATAAGCTGTTGAGCCCCGTGATCTCCCAGGTCAGCGCGCCCCAGTCCAACAAGGAGCGGCTGAAGAACATGGCGCTGGGCATCGCAGAGCGcTATAGGACTCACGGCATAGCTGGAGAGAAGTCTGTGGACAGCACCTTCTACCTCCTGCTGGATCTCATCACATTTTTCGATGAGTACCACGCAGGGCACATCGACAGAGCGTATGACGTGATGGAGCGGTTGAAGCTGGTCCCTTTGAGCCAAGATAGTGTGGAGGCCAGAGTTGCTGCCTTCAGGAATTTCAGTGACGAGGTGCGGCACAACTTGTCGGAGGTGCTGCTGGCCACCATGAACATCCTGTTCACGCAGTACAAGAGGCTGAAGGGGGCCGGTGCCGCCACCCCTGGCCGGCTGCAGCGCTCCATGGAGGACAGGGACTCGGAGCTGCGCAGTCAAGCTCGCGCCCTGATCACCTTTGCTGGAATGATCCCCTACCGCATGGCTGGAGACACCAATGCCAGGCTGGTTCAGATGGAGGTCCTGATGAACTgacttcttctctctctccctttcaaaCCCTCTGTTCTTTTAGGGTAACGCTTCCCCTCCCCCCCGCcagatttctgttttgtatttttcaccaatttaaataaaaaaaa
>TU78418
TGTGCGTTTTCGCTTTGCACCCGGTTTCGCCCTGTGAGAGTCGCTATAAATACACAGCAGCGCGGCTGCAGAGTACACACTTCACCCGCACACGActgcatcaaaataaaataaaagaagggaagaaaaaatgGATCCAAAATCCTGCGCATGCTCAAAGACCGGGTCTTGTGACTGCGGGGAGAGCTGCAAGTGCGTGGACTGCAAATGCCAGGGCTGCTGCAAGAAGAAGAgctgctgctcctgctgctcgGCCGGCTGCAGTAAGTGCGCGTCCGGCTGCGTGTGCAAGGGGCAGACCTGCGACACCAGCTGCTGCAAGTGAGGACCAGCGCCCACCCTGACGGACCCCCGCCTCCACACGGATCTCTGCAACTgagcttttttgtaaaatacactgaagtgcatgttatttttcttgcctCTAATTAAATAAACGCTTTAATGTAGCGGATACTTGGTCTGTTTTGTGTATACATTATACGTGCCCCCCTCTCCAGCATTCTCATCAACATGATtgcttttaattgaaatgcGTGCATGTGTGACCTCTGCAAGGTTACTATTCATGTGTTGACTGGTTG

Function

symbol description
nup93 Predicted to be a structural constituent of nuclear pore. Predicted to be involved in nuclear pore complex assembly; poly(A)+ mRNA export from nucleus; and protein import into nucleus. Predicted to act upstream of or within mRNA transport and protein transport. Predicted to be located in nuclear membrane and nuclear periphery. Predicted to be part of nuclear pore. Human ortholog(s) of this gene implicated in nephrotic syndrome type 12. Orthologous to human NUP93 (nucleoporin 93).

NR:

description
nuclear pore complex protein Nup93 isoform X2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005643 nuclear pore cellular_component

KEGG:

id description
K14309 NUP93, NIC96; nuclear pore complex protein Nup93

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020346 True 3093 mRNA 0.58 26 16794996 16817767
TU78418 False 584 lncRNA 0.51 3 16814314 16815372

Neighbor

gene id symbol gene type direction distance location
AMCG00020347 NA coding downstream 3714 16779003 ~ 16791282 (-)
AMCG00020348 NA coding downstream 16374 16770322 ~ 16778622 (-)
AMCG00020345 NA coding downstream 26036 16762077 ~ 16768960 (-)
AMCG00020339 NA coding downstream 37627 16726578 ~ 16757369 (-)
AMCG00020340 NA coding downstream 80789 16683884 ~ 16714207 (-)
AMCG00020342 clg19h16orf70,LOC106573725,LOC106560845,LOC105892482,LOC103042166 coding upstream 11184 16828951 ~ 16841510 (-)
AMCG00020344 NA coding upstream 31113 16848880 ~ 16849657 (-)
AMCG00020343 cbfb,LOC107715607 coding upstream 49465 16867232 ~ 16870178 (-)
AMCG00020357 NA coding upstream 177118 16994885 ~ 17000013 (-)
AMCG00020356 NA coding upstream 204085 17021852 ~ 17026667 (-)
G62582 NA non-coding downstream 114372 16679856 ~ 16680624 (-)
G62580 NA non-coding downstream 125485 16668897 ~ 16669511 (-)
G62475 NA non-coding downstream 314006 16480530 ~ 16480990 (-)
G62283 LOC107575789 non-coding downstream 1371422 15423155 ~ 15423574 (-)
G62191 NA non-coding downstream 1760920 15032135 ~ 15034076 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding upstream 79103 16896870 ~ 16923733 (-)
G62659 NA non-coding upstream 169552 16987319 ~ 16989284 (-)
G62660 NA non-coding upstream 172500 16990267 ~ 16990714 (-)
G62675 NA non-coding upstream 201023 17018790 ~ 17019552 (-)
G62715 NA non-coding upstream 302387 17120154 ~ 17175835 (-)
G62618 NA other downstream 1829 16792866 ~ 16793167 (-)
AMCG00020336 NA other downstream 170026 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 519423 16272451 ~ 16275573 (-)
G62415 NA other downstream 539877 16252788 ~ 16255119 (-)
G62409 NA other downstream 674843 16118989 ~ 16120153 (-)
G62853 necab2 other upstream 792897 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 1169414 17987181 ~ 18015862 (-)
G62961 NA other upstream 1188401 18006168 ~ 18039960 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 3470803 20288570 ~ 20299843 (-)
G63464 NA other upstream 4494435 21312202 ~ 21312605 (-)

Expression


Co-expression Network