AMCG00020348


Basic Information

Item Value
gene id AMCG00020348
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16770322 ~ 16778622 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020348
CGAGAAACTTTACACAGAGGCGGGCGGCTGGCTCTCTGATCGCTGTCTGTAATTAAGCAAGACAAAGGGCTTCTAATTGGGCATCTGCTTTTGAGGACGAATCGTTTTGATTTGAGCCACGACCCGAGTTTCTTTGCGTTACTCGAACCACTGTAAGCTGATCTTCATTTCTCGGGGAGGAAacgaaacattaaaaacaaaatggacaatCCAGGAAATCCCCCCGAGCTGGGGACGATCACTGTGGTGGTCAAAAGCCCCAATCAGGCTCATGAAGACCGGGTGATTGAAGGCGTGCAGCTGGCGTGGACGGTGGGGCAGCTGAAGACGCACTTGTCACACGTGTACCCGACCAGTCCTCCTGAGAAAGACCAGAGGCTCATCTATTCCGGGAAACTGCTGCCAGACCACCTACACATTAAAGACGTGTTTCGAAagTCGGACTCCATGCCTACTATTCACTTGGTGTGCAGCTTCAAGCCTCGTCCAGGAGCACAACAGGGAGCCTCACAGCACGGGGAGACGGCGCACATGGAGTCTGGGAATACTGCCTCCgccactgcccccccgccccatgAGGATGGACTGCGACACAGAGGGAATCCCCAAGGTGTTTCTTCTGCCACGCTGGGAGCAGCTGAGATGCACCACCCGGCTTTTGCCACTTACTCCATGTACAGCCCCCAGCAGCTCCTGTGGCTCCAGCAGATGTATGCCAGGCAGTACTACATGCAGTATCAGGCGGCTCTGGCAGctgcttcctcttcctcctcccacGTGACTGCTGGAAGCCCCTCCTTGCCAGTGGTTTCCCCGCCTGCCCCAGCTTTGGCGAATCAAGCACCGGTGGACAACCTCCCAGCCAATCAGGACGCACCACAGCCCCAGCTCATCAACCCAGGGGCCAATCAGAACCTGCGGATGAATGCCCAGGGCGGGCCGGTGATGGAGGATGAGGAGGACATGAACCGTGATTGGCTCGACTGGATTTACACGGCTGCCCGCTTCTCGGTCTTCCTCAGCATCTTGTACTTCTACTCCAGCGTGAGCCGCTTCGTGCTGGTGATGAGCAGTCTGCTGATTATGTACCTGCACACCGCGGGCTGGTTCCCCTTCAGACGGAGAGCGGCGCAGCCAGGCCGTGACATCCCCCTGCCGCCCGAGGTCGTCCAGAACCAGCACAACCAGATCCGAAACCAGCTCCAGGAGGAGCAGCTGCAGCCAGAGGGGGATGGGCAGGAGGAGGCCACTCTGCAGGATGTAGACATGGAGCCCCAGAGGGTCTCGTTGGTGGGCATGGCCTGGGTTTTCTTCAAGACTTTCTTCTCCTCCCTGATCCCAGAGGGACCGCAGGCCATGGTCAACTGACCAGGCCCCGAGCCCCGGGCCTCCGCAGGGTAACCTTGAGCATCATTGTAAAGATGTATCAACATTGGGCAGGACTGCACGGCCTCGGGTTGAAATGCCTTTCCTGATGAATTCCCTGGCCTTCAGGAAGAAGTCTCCTGTGCTGGAAGAGTCTTCCCTTTGACAtgtgtatttaagaaaaaaaaagaaaaaatcccaTTTCCTCAGAAGCCACAATGCTTGCCTGTCATTGGCTGGAAATAAATTGTTAATGTCCCTGTtgcaatattgtaaataatgtaaatatgtgcAGGCAATGGAAATATCAGAAATGGTTGTACAGTTGGAGAAGAGCACTTTATGTAGAAAGGAGAATCAGTTCGacacctcccccctccccctttttcCTTATAATGCTGCTGTACAAAATGCTGTTTAGATACGACGAATTCTGCCTTGTGCTCCCCATCAACGGCTCTGTCTGCAGAAGGACTTTTAGGTGGAAAGGCCTGAAGTAAGAGGCTGGTAATTGGAAGTAAATACATCCTGCAGAATTTCCCTGTGTCTCTCCAAGACATCTTATTCTTGTTAATGACCAATGGACTGAGCCATTCACTAGTGTCTTCTGGCTCAAAATATGAAGCTTACAGGAAGAAAGGGGGATTATGGTCCTGTAcctgtatatgtttgtttaaaaaaaattaaaaaaattatagtAATTGAAAACCTGTTAAATCTTtggaattatgtttttgtgtgtatatctaaACTTTGTATACATGCAAGTGCAATCCTTATTCCTTTTGGGATGGTTTCTTGGAAAATCACAGACCTACACTGAGTGTAATTTGTGACCTTACCCTTGTAAATTGATGAGGCTTCTTAATGAGCAGTGTTGCCTGGCTTGTACCATAGAACCACTTTATAAttgctattaaaatatatatttgtggaagatttattaaataaatgcatttcttgtATCTCTCCTCCTTCGTCTTCTCCTGTTATAAAGAATGTGTTGGTGTGGCCAAGCAGAG

Function

GO: NA

KEGG:

id description
K14027 HERPUD1, HERP; homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020348 True 2387 mRNA 0.50 8 16770322 16778622

Neighbor

gene id symbol gene type direction distance location
AMCG00020345 NA coding downstream 1362 16762077 ~ 16768960 (-)
AMCG00020339 NA coding downstream 12953 16726578 ~ 16757369 (-)
AMCG00020340 NA coding downstream 56115 16683884 ~ 16714207 (-)
AMCG00020334 rspry1,LOC106560854 coding downstream 107228 16647262 ~ 16663094 (-)
AMCG00020335 LOC107576748 coding downstream 125831 16641004 ~ 16644491 (-)
AMCG00020347 NA coding upstream 381 16779003 ~ 16791282 (-)
AMCG00020342 clg19h16orf70,LOC106573725,LOC106560845,LOC105892482,LOC103042166 coding upstream 50329 16828951 ~ 16841510 (-)
AMCG00020344 NA coding upstream 70258 16848880 ~ 16849657 (-)
AMCG00020343 cbfb,LOC107715607 coding upstream 88610 16867232 ~ 16870178 (-)
AMCG00020357 NA coding upstream 216263 16994885 ~ 17000013 (-)
G62582 NA non-coding downstream 89698 16679856 ~ 16680624 (-)
G62580 NA non-coding downstream 100811 16668897 ~ 16669511 (-)
G62475 NA non-coding downstream 289332 16480530 ~ 16480990 (-)
G62283 LOC107575789 non-coding downstream 1346748 15423155 ~ 15423574 (-)
G62191 NA non-coding downstream 1736246 15032135 ~ 15034076 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding upstream 118248 16896870 ~ 16923733 (-)
G62659 NA non-coding upstream 208697 16987319 ~ 16989284 (-)
G62660 NA non-coding upstream 211645 16990267 ~ 16990714 (-)
G62675 NA non-coding upstream 240168 17018790 ~ 17019552 (-)
G62715 NA non-coding upstream 341532 17120154 ~ 17175835 (-)
AMCG00020336 NA other downstream 145352 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 494749 16272451 ~ 16275573 (-)
G62415 NA other downstream 515203 16252788 ~ 16255119 (-)
G62409 NA other downstream 650169 16118989 ~ 16120153 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other downstream 667583 16098900 ~ 16102739 (-)
G62618 NA other upstream 14244 16792866 ~ 16793167 (-)
AMCG00020346 nup93,LOC103368977 other upstream 16374 16794996 ~ 16817767 (-)
G62853 necab2 other upstream 832042 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 1208559 17987181 ~ 18015862 (-)
G62961 NA other upstream 1227546 18006168 ~ 18039960 (-)

Expression


Co-expression Network