AMCG00020354


Basic Information

Item Value
gene id AMCG00020354
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17049350 ~ 17057242 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020354
GTGGTGGTTCCAACACGTGTGGGGCAGGTGTATGTGTACGACACAAGCAAGGCTGAACAAGACGATCGCGAGGTCATGCAGGAGATCTACGACACACCACCGAGTGTCGAGAAGAGCCACCTCGTCTCCCAGCAAACGGTGTACGACTTCCCCCCTTCTGTCAGCAAGGACGTGCCTGATGGGCCCCTGCGAGAGGAGACCTACGACGTCCCGCCACACTTTGTGACGATGAAGAAGAGCCCCGACAACAAGCAGTTCCTGTCGCAGGTGCTGCCAGCAGAGCACCTCCAGGAGGATGTGTATGATGTGCCGCCACTATCAGGCAAGCTGCAGGACCCGGTCATGCTGGGGCAGGAGGTCTACGACATCCCAGCCAGCCTGCGCTCGGGACAGCACTCGTTGGATGTCTATGACTTCCCCCGGGAGCACCAGGCGGGGGGCAGGACGGGGGGCGACGACGCGGGCGACTATATCTATGACGTGCCCCCACAGGTGGTGCGGGACGCGACCTCCACCGAGGAGCTCAGCATCAACTTCAAGCGGCTGTCGGCCTCCAGCACGGGCAGCACACGCAGTAACCTGTCCACCTCCTCCCTGGACGTCATCCCGGTCAAGGAGTCCAAGCCGGCGGTGGGCAAGGAACTGAACCTGGAGCTGGACGTGGCCATGGAGGTGCTGGTGAAGCTACAGCATGGTGTAGAGGGCTCTGTCTCCGGCCTCATGGCCTACATCAACAGTGGCTGGCGCAGCCCAGAGCAGATGGAGGTCAACCTGCAGGGCATTCGATTGGCTGTTGAGCGGGTCAAGAGCTCGGTTAGGGAGCTGCTGGAATTCGCCACGGGGGCTGTGGCCAACGCCGCCCAGGCCACTGATCGTACGCTGCAGGCCAAGCTCAGCAAGCAGGTGCTGAAGATGGACGAGGGCTACCAGGGGCTGCTGAAGCATAGCCAGGCACTGGACAGTTGCAACTGGGCCCTGAGCGTGCTGGTGGCTGGCAAGAACACTGCCGGGGACGACCTGGACCGCTTGGTGCTGTGCTCCCGGGGTGTCCCCGATGACACAAAGCAGCTGGCCTCCTTCCTGCATGGCAACGCCTCTCTGCTGTTCAAAAGGACAAAgcagccacagcagcagcaggcgcCACAGACTCCTCTGCTGGGTGACTCCCGGCACACCCTCTCCCAGGCCGGGCTCGATGCCCTGGGCCAGGtgaccaacaacaacaacatctcCGCCTACCAGAGCGGCCTCCCCGAGAAGGCCAACATCCAGTCCCGGCCGCTCCCCTCGCCGCCCAAGTTCATGGCAGAGGAGTCGCCAGACAGCCAGTACGAGAACACAGAGGGAGGCTGGCTGGAGGACTACGACTATGTGCATCTGCAGGGGAAGGAGGAGTTTGAAAAGAACCAGAAGGAGCTGTTAGAGAAAGGAAACATTATCCGACAGAACAAGCCacagctggagcagcagcagCTGAAGCAGTTCGAGCGGCTGGAGCAGGAGGTGACGCGCCCGATTGATAACGACATGTCCAACTGGACCCCGCCCTCACACTACCCCCCCACGCGCAGCAAGCTGAGCCCCGGCGACCGGCAGCTGCTGCTGTTCTACGCGGAGCAGTGCGAGGCcaacatcaccacgctgaccaACGCCATCGACGCCTTCTACTCCTCCATCAACAATAACCAGCCACCCAAGATCTTCGTGGCCCACAGCAAGTTCGTCATCCTCAGCGCCCACAAGCTGGTCTTCATCGGTGACACCCTGTCACGCCAGGCCAAGGCCCCGGAGATCCGCAACAAGgtgacacagcacagcaacCTGCTCTGCGACAAGCTGAAGGAGATCGTGGTGACCACCAAGACCGCCGCCTTACAGTACCCATCAGCCACTGCGGCCAAGGACATGATTGACAGGGTCAGGGGCCTGGCGAACTCCACGCAGCAGTTCCGCATGGTGCTGGGACAGCTGGCTGCCATTTGA

Function

GO: NA

KEGG:

id description
K05726 BCAR1, CAS; breast cancer anti-estrogen resistance 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020354 True 1983 mRNA 0.62 5 17049350 17057242

Neighbor

gene id symbol gene type direction distance location
AMCG00020355 nudt21,LOC107660760,LOC107690386,LOC107721012 coding downstream 17238 17028087 ~ 17032112 (-)
AMCG00020356 NA coding downstream 22683 17021852 ~ 17026667 (-)
AMCG00020357 NA coding downstream 49337 16994885 ~ 17000013 (-)
AMCG00020343 cbfb,LOC107715607 coding downstream 179172 16867232 ~ 16870178 (-)
AMCG00020344 NA coding downstream 199693 16848880 ~ 16849657 (-)
AMCG00020359 NA coding upstream 15547 17072789 ~ 17074242 (-)
AMCG00020363 NA coding upstream 81420 17138662 ~ 17139769 (-)
AMCG00020367 NA coding upstream 259855 17317097 ~ 17325531 (-)
AMCG00020372 NA coding upstream 335315 17392557 ~ 17402108 (-)
AMCG00020374 ranbp10,LOC106560827 coding upstream 351312 17408554 ~ 17415648 (-)
G62675 NA non-coding downstream 29798 17018790 ~ 17019552 (-)
G62660 NA non-coding downstream 58636 16990267 ~ 16990714 (-)
G62659 NA non-coding downstream 60066 16987319 ~ 16989284 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding downstream 125617 16896870 ~ 16923733 (-)
G62582 NA non-coding downstream 368726 16679856 ~ 16680624 (-)
G62715 NA non-coding upstream 62912 17120154 ~ 17175835 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding upstream 307581 17364823 ~ 17370446 (-)
G62880 NA non-coding upstream 790916 17848158 ~ 17851113 (-)
G62951 cnot1 non-coding upstream 910991 17968233 ~ 17969691 (-)
G62981 NA non-coding upstream 1080238 18137480 ~ 18138298 (-)
AMCG00020346 nup93,LOC103368977 other downstream 231583 16794996 ~ 16817767 (-)
G62618 NA other downstream 256183 16792866 ~ 16793167 (-)
AMCG00020336 NA other downstream 424380 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 773777 16272451 ~ 16275573 (-)
G62415 NA other downstream 794231 16252788 ~ 16255119 (-)
G62853 necab2 other upstream 553422 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 929939 17987181 ~ 18015862 (-)
G62961 NA other upstream 948926 18006168 ~ 18039960 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 3231328 20288570 ~ 20299843 (-)
G63464 NA other upstream 4254960 21312202 ~ 21312605 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_02718442_02730091 BCAR1 coding CI01000013 null 2718306 ~ 2731589 (-)