AMCG00020355 (nudt21,LOC107660760,LOC107690386,LOC107721012)


Basic Information

Item Value
gene id AMCG00020355
gene name nudt21,LOC107660760,LOC107690386,LOC107721012
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17028087 ~ 17032112 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020355
GTGCTGGACGGAGCGGAGAGTGTTGTTCAAAGCGAGCCcgcagacctgcacaccattgaTTCCGATTTAGGGAAGGGCAGTCTGGGGAAGTGTGTCGTGTCGTGAAGTCCGTGTGGACgggtttatttgtgtttaactGTTTTTCCTCCGGCTGGAAGTGATAGACCTGCGAGAACCATGTCGGTCGTGCCTCCGAACCGATCACAGACCGGGTGGCCCCGCGGGGTCAATCAGTTCGGGAACAAGTACATCCCACAGCCGGCCAAACCGCTGACCCTGGAGCGCACGATCAACCTgtatCCATTGACAAACTACACATTTGGGACGAAGGAGCCCCTCTATGAGAAGGACAGCTCAGTGGCGGCCCGCTTCCAGCGGATGCGGGAGGAGTTTGAGAAGATCGGGATGAGGCGGACGGTGGAGGGGGTTCTGATCGTGCATGAACACAGACTCCCCCATGTGCTCTTGCTGCAGCTTGGCACCACTTTCTTCAAACTGCCCGGTGGGGAGTTAAACCCAGGGGAAGATGAAGTGGAGGGGCTCAAGCGTCTCATGACGGAGATTCTGGGACGGCAGGATGGGGTGCAGCAGGACTGGGTGATTGACGACTGCATTGGCAACTGGTGGAGGCCCAACTTTGAACCCCCACAGTACCCCTACATACCAGCTCACATCACTAAACCCAAGGAACACAAGAAGCTCTTCCTTGTGCAGTTACAAGAGAAAGCTCTGTTTGCGGTACCCAAGAACTACAAGCTGGTGGCAGCTCCTCTTTTTGAGCTCTATGACAATGCTCCAGGCTATGGCCCTATCATATCCAGCCTTCCACAACTTTTAAGTAGGTTCAATTTCATTTACAACTGAGAACAGTGCTGTCCCTGGTGTCCAGTGATGGGTTGATGGCTGTCTCTGTGAGTGCAGCTTCAGAACGTGCAGAACCTCGAGGAGAGAGAGTTCTGtgcaacttttttcttttctttttactttcaAGTGTTTTGTTACAGCTGTATACAGACGTCTTGTTTTAAGTTAGttgacataattaaaacaaaaaaagaaatgtgaactGTTATAAAGAATGAAGTGAGActtgtcccccctcccccccccgttcagtaatattttttaaaataaattcccaCTATAGCTACCACTTTTATACTTCATTAAACCTGTTCCCTGCTGACTCAATAATCTCCTGTTCTTATGTACTTCTGCACATGAATCCAGGTATTTGTAGTGTATAATTTAAAGGTGGAAATAGATGTCCTTgcgttatttttattttatacagaatCATTGTCATACCATTTTATAATAAACTAGCCTTTCCTTGTGGGCAATTTCAactttttgatgtttttcattaaatgtgca

Function

symbol description
nudt21 Predicted to enable identical protein binding activity and mRNA 3'-UTR AU-rich region binding activity. Predicted to be involved in several processes, including positive regulation of cell differentiation; protein-containing complex assembly; and regulation of mRNA metabolic process. Predicted to act upstream of or within cell differentiation and mRNA polyadenylation. Predicted to be located in cytoplasm and paraspeckles. Predicted to be part of mRNA cleavage factor complex. Orthologous to human NUDT21 (nudix hydrolase 21).

NR:

description
PREDICTED: cleavage and polyadenylation specificity factor subunit 5

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0016567 protein ubiquitination biological_process
GO:0042382 paraspeckles cellular_component
GO:0005849 mRNA cleavage factor complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0017091 AU-rich element binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K14397 NUDT21, CPSF5, CFIM25; cleavage and polyadenylation specificity factor subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020355 True 1377 mRNA 0.47 7 17028087 17032112

Neighbor

gene id symbol gene type direction distance location
AMCG00020356 NA coding downstream 1420 17021852 ~ 17026667 (-)
AMCG00020357 NA coding downstream 28074 16994885 ~ 17000013 (-)
AMCG00020343 cbfb,LOC107715607 coding downstream 157909 16867232 ~ 16870178 (-)
AMCG00020344 NA coding downstream 178430 16848880 ~ 16849657 (-)
AMCG00020342 clg19h16orf70,LOC106573725,LOC106560845,LOC105892482,LOC103042166 coding downstream 186577 16828951 ~ 16841510 (-)
AMCG00020354 NA coding upstream 17238 17049350 ~ 17057242 (-)
AMCG00020359 NA coding upstream 40677 17072789 ~ 17074242 (-)
AMCG00020363 NA coding upstream 106550 17138662 ~ 17139769 (-)
AMCG00020367 NA coding upstream 284985 17317097 ~ 17325531 (-)
AMCG00020372 NA coding upstream 360445 17392557 ~ 17402108 (-)
G62675 NA non-coding downstream 8535 17018790 ~ 17019552 (-)
G62660 NA non-coding downstream 37373 16990267 ~ 16990714 (-)
G62659 NA non-coding downstream 38803 16987319 ~ 16989284 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding downstream 104354 16896870 ~ 16923733 (-)
G62582 NA non-coding downstream 347463 16679856 ~ 16680624 (-)
G62715 NA non-coding upstream 88042 17120154 ~ 17175835 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding upstream 332711 17364823 ~ 17370446 (-)
G62880 NA non-coding upstream 816046 17848158 ~ 17851113 (-)
G62951 cnot1 non-coding upstream 936121 17968233 ~ 17969691 (-)
G62981 NA non-coding upstream 1105368 18137480 ~ 18138298 (-)
AMCG00020346 nup93,LOC103368977 other downstream 210320 16794996 ~ 16817767 (-)
G62618 NA other downstream 234920 16792866 ~ 16793167 (-)
AMCG00020336 NA other downstream 403117 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 752514 16272451 ~ 16275573 (-)
G62415 NA other downstream 772968 16252788 ~ 16255119 (-)
G62853 necab2 other upstream 578552 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 955069 17987181 ~ 18015862 (-)
G62961 NA other upstream 974056 18006168 ~ 18039960 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 3256458 20288570 ~ 20299843 (-)
G63464 NA other upstream 4280090 21312202 ~ 21312605 (-)

Expression


Co-expression Network