AMCG00020356


Basic Information

Item Value
gene id AMCG00020356
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17021852 ~ 17026667 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020356
ATGAGCTCGAAGAGGCGGCAACGCGACGCCGAGACCCAGGGCAGAGGCAAGAAGAAAGAGAAGCGAGAAGAGCCGGCACAGATGTCCAGACTGCTGCAGGACGCGGGGTTGCTAATACCTGAAAACAGACACCAATGCAAAACGTAAGGAGGTGTGGAGCTGGACACCCATCCCTTCCCACACTGCGTGCTCAACAacttcctccagagccagaCTTTCCTGCAGGAGTTGCAGAGGGAGCTCCTGGAGCTGAACTTCCACCAGAAATCCAACGACCTCTATAAGTTTCAGCAGTCTGATGACTTGAAGACCAAGAGAGAGTCCCATATCGCTGCGTTGCGATCCGTCCTGTTCCAGCGGTTTCGCTCGTGGCTGTCAGAGGTCCTGCAGTTGGAGCTGGAGGACACCGTGGACATCTCCTGTGCTAAGTACGAGTACACGGATGTTTTGCTCTGCCACGATGACGAACTGGAGGGCAGGAGGATTGCGTTCATCCTCTACCTGGTCCCGCCTTGGGAGCAGAGCGACGGAGGCACGCTCGACCTGTACAGCACCGACAAGAATTATCAGCCCGAAAAGATTGTGAAGTCCTTAGTCCCCTCTTGGAACACATTAGTCTTCTTCGAGGTGTCGCCTGTCTCCTTCCACCAGGTTTCGGAGGTCATCTCGGAGGACAAGTGCCGTCTGTCTGTTAGCGGCTGGTTCCACGGGCGCTCTCTGGAGAGGCCCCCGCGCTACACTGAACCGACCCTGCCACGCAGCCCCCACCGCCCTCACGAGGAGCAGCTGCTGTACGACTGGATCAACCCTGTGTATCTGGACATGGCGTACCAGGCTCAGGTGCAGGAGGAGTTCGAGGAGAGCTCTGAGATCCTTCTAAAAAACTTCCTCCAGCCTGAAAAGTTTAAGATGGTGAACGACGCGCTGAGAGAGACGGACATAGAGTGGGTGAGAAGAGGACCCCCCAACAAGAGgTGCTACGGGCAGGCAGAGGAAGCTGGGCTCCCGCAGTGTGTGAGGGAATGCTGGGAGCTGCTGTCTTCAGAGCCCTTTTTCCTGCTCCTCTCCAACTTCACTGGCCTCAAGCTGCACTTCCTGGCCTCAGggagtgaggaagaggaggaagaggagaaggagaaggaggaggaagaagagggggagaCAGTAGGGGTCTCAAAGGCCACAGCATCCACACATGGAAACCCCCCAGGAGAAAATGCCATGGagccCAGTGTGCCGCTGTGTCTCGGGGAGCTGCGGCGCTGGGGGCACGGAGACTACACTGTAGTCCACGACACTGACCTGCACAACGCGGAGTTTGCACTCGACCTTCTGTTCTACTGTGGCTGTGAGGATTGGCAGCCTGAATCTGGGGGTTTTACATCTTACATTGCCAACGGAGAAGATGAGGAGCTTCTCACCATCAACCCAGAGAACAACGCGCTGGGCCTGGTGTACCGAGACAAAGAGACTCTGAAGTTTGTGAAGCACATCAATCACCACAGCGCCGGCCGGCCAGAGAGCCACACGCCTGCAAAGGTTTTCTACAGTTTTTCGTTTGTGTATTACGAGTGAGTCAATTAATAAAGGGCTTTCGAAGGCTGTTGCTCTGTGTGATGGAGTGACCATCTTGAAGGAAATcattaacatgttattaatggatattggttgggtgtgagagag

Function

GO:

id name namespace
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0043167 ion binding molecular_function

KEGG:

id description
K24029 OGFOD1, TPA1; prolyl 3-hydroxylase /prolyl 3,4-dihydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020356 True 1683 mRNA 0.55 14 17021852 17026667

Neighbor

gene id symbol gene type direction distance location
AMCG00020357 NA coding downstream 21839 16994885 ~ 17000013 (-)
AMCG00020343 cbfb,LOC107715607 coding downstream 151674 16867232 ~ 16870178 (-)
AMCG00020344 NA coding downstream 172195 16848880 ~ 16849657 (-)
AMCG00020342 clg19h16orf70,LOC106573725,LOC106560845,LOC105892482,LOC103042166 coding downstream 180342 16828951 ~ 16841510 (-)
AMCG00020347 NA coding downstream 230570 16779003 ~ 16791282 (-)
AMCG00020355 nudt21,LOC107660760,LOC107690386,LOC107721012 coding upstream 1420 17028087 ~ 17032112 (-)
AMCG00020354 NA coding upstream 22683 17049350 ~ 17057242 (-)
AMCG00020359 NA coding upstream 46122 17072789 ~ 17074242 (-)
AMCG00020363 NA coding upstream 111995 17138662 ~ 17139769 (-)
AMCG00020367 NA coding upstream 290430 17317097 ~ 17325531 (-)
G62675 NA non-coding downstream 2300 17018790 ~ 17019552 (-)
G62660 NA non-coding downstream 31138 16990267 ~ 16990714 (-)
G62659 NA non-coding downstream 32568 16987319 ~ 16989284 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding downstream 98119 16896870 ~ 16923733 (-)
G62582 NA non-coding downstream 341228 16679856 ~ 16680624 (-)
G62715 NA non-coding upstream 93487 17120154 ~ 17175835 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding upstream 338156 17364823 ~ 17370446 (-)
G62880 NA non-coding upstream 821491 17848158 ~ 17851113 (-)
G62951 cnot1 non-coding upstream 941566 17968233 ~ 17969691 (-)
G62981 NA non-coding upstream 1110813 18137480 ~ 18138298 (-)
AMCG00020346 nup93,LOC103368977 other downstream 204085 16794996 ~ 16817767 (-)
G62618 NA other downstream 228685 16792866 ~ 16793167 (-)
AMCG00020336 NA other downstream 396882 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 746279 16272451 ~ 16275573 (-)
G62415 NA other downstream 766733 16252788 ~ 16255119 (-)
G62853 necab2 other upstream 583997 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 960514 17987181 ~ 18015862 (-)
G62961 NA other upstream 979501 18006168 ~ 18039960 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 3261903 20288570 ~ 20299843 (-)
G63464 NA other upstream 4285535 21312202 ~ 21312605 (-)

Expression


Co-expression Network