AMCG00020357


Basic Information

Item Value
gene id AMCG00020357
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16994885 ~ 17000013 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020357
ATGTCAAACTGTGGGTCTGGGTCATGGACCGGGAGTGTGTTTCTGTTCCTTCAGTCTGATTCTGCACATATCGATCTGCTAGACTTGTACAAAGAAGACGACCAGaaattcaacattttcaaagctcTCAAGCTAGCACTATCAgATGCTGTAGGGGGCTTGGAGGGGTATGAAGTCTTGAAAGTGCATGATGCCCAGCCCAGCTTGGGGGTCCTGATTAAGTTCGTGGAGGAGGCGAAGTGCAGGAGGTTCCTGCAGAGCTATAGCAGCGGGTCGGTGCAGCAGTTTTTCGGTCAGCACCTGAGCCACCTGCTGCCAACCGAGGAGGAGATCCCCATTACCACCCAGCTCAAGGCCGGCAGTGAAACCCTGGATGACTTTCTCAAAGACGAGGACCTGTGTCTGCAGCACATCCACCGGGAGCAGCCCGATCGGCTGAGGGATGATGAGGTGTCCGAGCTGGAGCAGAAACTGCAGAGTCTGCTTGTGGGCGAGCGGGCCCCTCAGGCCTCCATTTCACTGGTGAAAGACCCCACATTGGCCCCTAACTGTTTCTACTTCCAGAGCAGAGTTTTCGACGACAGGCAGCTAACCGTGGCCGACCATCAGTGCTTCGCCAGCAACGTGGGGAAGGACTGGAAGAAAGTGGGCCGCTCCTTGCAGAAGAGCTGCCGGGCATTGGCGGGATCGGCCATTGACAATCTGGCCTACGAGTACGAACGCGAGGGCCTGTACGAGCAGGCCTACCAGCTGCTCAGCAAGTTCATGCAGGCCGAGGGCAAGGCTGCCACCCTGAGCCGCCTCATCACCGCTCTGGAGGAGAACAAACTTGTGGGCATGGCTGAAATCATGTTGAAAATCCAGCCCACAGAGTGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
K03171 TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020357 True 876 mRNA 0.56 4 16994885 17000013

Neighbor

gene id symbol gene type direction distance location
AMCG00020343 cbfb,LOC107715607 coding downstream 124707 16867232 ~ 16870178 (-)
AMCG00020344 NA coding downstream 145228 16848880 ~ 16849657 (-)
AMCG00020342 clg19h16orf70,LOC106573725,LOC106560845,LOC105892482,LOC103042166 coding downstream 153375 16828951 ~ 16841510 (-)
AMCG00020347 NA coding downstream 203603 16779003 ~ 16791282 (-)
AMCG00020348 NA coding downstream 216263 16770322 ~ 16778622 (-)
AMCG00020356 NA coding upstream 21839 17021852 ~ 17026667 (-)
AMCG00020355 nudt21,LOC107660760,LOC107690386,LOC107721012 coding upstream 28074 17028087 ~ 17032112 (-)
AMCG00020354 NA coding upstream 49337 17049350 ~ 17057242 (-)
AMCG00020359 NA coding upstream 72776 17072789 ~ 17074242 (-)
AMCG00020363 NA coding upstream 138649 17138662 ~ 17139769 (-)
G62660 NA non-coding downstream 4171 16990267 ~ 16990714 (-)
G62659 NA non-coding downstream 5601 16987319 ~ 16989284 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding downstream 71152 16896870 ~ 16923733 (-)
G62582 NA non-coding downstream 314261 16679856 ~ 16680624 (-)
G62580 NA non-coding downstream 325374 16668897 ~ 16669511 (-)
G62675 NA non-coding upstream 18777 17018790 ~ 17019552 (-)
G62715 NA non-coding upstream 120141 17120154 ~ 17175835 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding upstream 364810 17364823 ~ 17370446 (-)
G62880 NA non-coding upstream 848145 17848158 ~ 17851113 (-)
G62951 cnot1 non-coding upstream 968220 17968233 ~ 17969691 (-)
AMCG00020346 nup93,LOC103368977 other downstream 177118 16794996 ~ 16817767 (-)
G62618 NA other downstream 201718 16792866 ~ 16793167 (-)
AMCG00020336 NA other downstream 369915 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 719312 16272451 ~ 16275573 (-)
G62415 NA other downstream 739766 16252788 ~ 16255119 (-)
G62853 necab2 other upstream 610651 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 987168 17987181 ~ 18015862 (-)
G62961 NA other upstream 1006155 18006168 ~ 18039960 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 3288557 20288570 ~ 20299843 (-)
G63464 NA other upstream 4312189 21312202 ~ 21312605 (-)

Expression


Co-expression Network