AMCG00020360 (tmem170a)


Basic Information

Item Value
gene id AMCG00020360
gene name tmem170a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17169991 ~ 17174708 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020360
GGTTACTGTAGGTCAGATTGTGGGACGAGGTGACGTGGTGCTCTGAAGTGGAAGTTTTGGTTGGGTTAATCCGCCCAGGGAAGAAGCGTTTGCGAGCAATCTGATTTGAATGCCTTGGAAGCTGGTGGTTTTATTTTCCCGTCACTGCTGGCCCTTTATTTGTCCATGGCTGAACGATGCAGAGCGGCAGTAACGACGCAAATGGTGCAGCGGGGTTTGTGCAGCAGATCCTCAGCCTGAATTTGGTCCCAAAGGCGGAAAATGGCACCCAGTGCTTCAACTCGTCTTCGCTGTGCGATTTCTCAGAGATGTGGTACGGCGTGTTCCTCTGGGCTTTGGTCTCCTCCCTGGCCTTCCACCTTCCCGCCGCCCTGCTGGCCCTCATCACGCTCCGGCACCACAAGACAGCCCGCTTCATGCCCGTGGCCATCCTGCTCATGAGCATCGTGGGGCCAGCCTTCGGAGGGGCCCTCACCAGTGCAGCAATAGCTGGGGTGTACAAAGcagcagggaaaaaaatgatCTCACTGGAAGCCCTTGTTTTTGGAGTGGGACAGTCGTTCTGCGTCCTGGTCATCTCCTTCCTGAGGGTCTTGGCGACGCTATAGCGGAGTGAGCGAGCAGGAGCCGAGCTGCCATGACAGGGCCTTAGGACATGTGCACCGAGTGAGGGCTGCAGGACAGACAACCCTTGTCAAGCCATCGGGGCATCCCGTGCAAACGCACCTGTCCCTTAAGAGGCCTTATTCCCAAGCCTGGCTGGCTCTGTGTCTATCCGTGGCAGAGTGGTCTAGGGCTGCCACCTGAAGCCGCCTCTGTCCGGTTTACTGAGCTGCACATCGGCTTTTCTCTTTCCTTACATGCTATTGGTTTCTCCCTAGCTGAGCCGAAGAACAGCCAACCCACACTGCTGGCCAGAGCAGCCTTCACTTCGGTTGGGCCTCCCCGTCATGCAGCACAAATTTATCTTGCACAGGCTTTAGTCTGGCGAGTGATCACTTGGGCAAGCCAGGTTTTCCCTTCTTGGAAGATGCCTACGCAGTGCAGTTTTGCCCTGAACAAGAACCGCACAGGCTCTCTGGACAGACACAGATTTCTTGCGTCTCATGTGGCTCGAGAGTCTTGCCAAGTCTCTGCAAGCCTGGGGTCTGTGACTTTTCCTGTTAGTGTTGCCCTTCGCTAAATTAGAGAAACTTTATAACGGGTGACATTCTCAAATGTGTGAACTGTGGAACACCAAAAGGTCAAAAGCAAGACCTGGTGATCCTTAGAGCCTTCGTTTTATTTTgcaagaagaaagaaatgagTTAATAGAAAGACTTTTGTTACTTAACTGTAATAGAGAAACCCTTATTAtatctttctttaaaacattaacaacacaaacaaacaaaaatgaatgccAAATATGTCCATTGGAAATCAGTTCATTTTggcaaataatgtaaaacatgctCCTTAACATCATCTTTAAATCTCTAGAACCTTACCAAAGAGAAATCCATACACACACCAGGTTAGCTTGCCTCTGTTGGAGCATGACCGAAGTCTGCTCCCAAATCAAGTCCTGTTTCCTATAATGTGGATGGTCTGAAAGGAGAGCATGCAGGAAGCGGCAGAGTGAAGCAGGCAATCATGGCTTTGTGACCAGGAGGCTCCGGTTTAATAATCCGATTCTCTGAAGCCGGGTCAAATGTTAACCTGTCCGAAACGAGTGACACCATCGGCACAGTCACTGTTCCTCTGACGCTCCTGGGAAGAGTACAACATTCCACTCCCACAATGCAGTGAGCCCATGTAAGGGGGGTcggaggaaggggagaaggcAGGAAATTGGATGGTGACGGTATATGGCCACAGTTAACCCTGGAGAACAGCGTTTAACCCGGGTTAGAAATGTCTGCCTTAAACCACCAATTTCTAAAACACTTGGAGCAAATGTTAGGTGTctttttgttaaattgtattttcttgaatCAGTTAGTCatgttgtgtctgtttgtcaAGTTGGGCCAGATCCTCCTGGGGGATTCCTGGGTGTTTAGGGAAGAGTGGGTCTCATTCTTGGTTCTGGGGCACCCACTGTACATAACATTTTTGACTGCTGTAATATTATAGCTTTTTACTTACTTTCAAGTGTTGGGGAAATACGTTATTGAAATTTTTTCTATGTAAAATTAAGCCAATTATGACAGGAGTGACGGCACAGTGGGGCCCCCAAGGACCCACCTGGACAACCCCGGGTGTTAGAGTATCGCactctttaatactgttttattgtttagagtattttacattttacaaattaaaacatttcaattttttaata

Function

symbol description
tmem170a Predicted to be involved in endoplasmic reticulum tubular network organization. Predicted to be located in endoplasmic reticulum membrane and nuclear envelope. Orthologous to human TMEM170A (transmembrane protein 170A).

NR:

description
PREDICTED: transmembrane protein 170A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020360 True 2329 mRNA 0.48 4 17169991 17174708

Neighbor

gene id symbol gene type direction distance location
AMCG00020358 NA coding upstream 127533 17041439 ~ 17042458 (+)
AMCG00020353 hsf4,LOC106560841,LOC106573731 coding upstream 150714 17003918 ~ 17019277 (+)
AMCG00020350 gnao1a,LOC100693875,LOC105926579,LOC108264367,LOC103138895,LOC106939917 coding upstream 182850 16984587 ~ 16987141 (+)
AMCG00020351 gnao1,LOC103367675,LOC108264367 coding upstream 190331 16966271 ~ 16979660 (+)
AMCG00020352 NA coding upstream 245510 16897017 ~ 16924481 (+)
AMCG00020362 NA coding downstream 1806 17176514 ~ 17179026 (+)
AMCG00020361 NA coding downstream 6233 17180941 ~ 17189251 (+)
AMCG00020365 NA coding downstream 63100 17237808 ~ 17258957 (+)
AMCG00020364 NA coding downstream 86974 17261682 ~ 17271532 (+)
AMCG00020366 NA coding downstream 101842 17276550 ~ 17316918 (+)
G62681 nudt21 non-coding upstream 123841 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 134493 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 180412 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 376111 16793664 ~ 16793880 (+)
G62564 NA non-coding upstream 523730 16644938 ~ 16646261 (+)
G62781 NA non-coding downstream 229677 17404385 ~ 17503263 (+)
G62909 NA non-coding downstream 779615 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 806325 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 813140 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 960285 18134993 ~ 18138267 (+)
G62632 NA other upstream 354134 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 565333 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 2697446 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 2937723 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 3218944 13948426 ~ 13951047 (+)
AMCG00020370 NA other downstream 258934 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 284436 17459144 ~ 17471869 (+)
G62895 NA other downstream 753620 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 883850 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 893079 18067787 ~ 18072051 (+)

Expression


Co-expression Network