AMCG00020361


Basic Information

Item Value
gene id AMCG00020361
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17180941 ~ 17189251 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020361
CTGTGATTGGGCAAGACTACCCAGAACGCACCGCAGGAGAGCCAGTAGGAGCGCAGTTTATTATCACACAATATGGCGGTCAGATGTCAGCACTACAGTACAGACAGGTCCTGATATCTTGTAGTATTACATATCTAGGTTTCTTTCCGCGCTTTTGCTGCCGCTGTGTACAGTGGGAAAGTTTGATAGGACAGGAAAACGACTGACTTGGTTATCCTGCAGCCGCCCCAGTCTCCCTGCAGTTTCTGCAAGTTTCCAGGATGATCCTTCACTTCTGCCCTCAGTGTGGCAACAAGCTTCAGTCAGGCTTCAAGTTCTGCCCCTCCTGTGGCGAGAAGCTGCCCGTTCAGGACCCCGAGCAGGCTGCGGCTTCGGCTTTCCCCCAGGTCGCGGTCACCGACAGCCCAGCTCCCAGTAGCCCAGTTCCCGTCATCCATCTCTCACCACTGCGAAGAACACGGCTGGCTGCTTCAAAGGTCAAAGGGGAAGAGGTGGTGGTCAGTGCCAGGGCATCCCCCTCACTCACTGCCTCTCCCAAATCTCCATCTGCGGGCCAGAGCAGCTGTGTCCCGCTGTCGCCTCGGAAGCGCCTCGCAACCCCAGTGGTTAAGCACGAGGAAGAGTCCAGTGTTGGGACCTCGACCTCTCCTAAATCCCCCTCTGCAGGGAAAAGCAAGGCGAAGCGAGCACGGAAGGCATGTGCCATAGAGCCCCTGCAGGAAGGGGAGCTGCTGACCGACTCGGGGGGCAAGAAGTGGACGCTGGGGAAGCTGCTCAGCCAGAGCGACTCTGAGCTGCTGTATGGAGttcagcAGAACTCAGCTGGAGCCTGTTCATCTGCCTACAAGTACGTCCTCAAACTGGCGTCCAAGGATGGAAGGATTTTCAATGAACTGAATTTCCTGCAGAGGGCAGCAAAACCTGCTCTGGTGGATAAGTGGATGAAACGCAGCAAGATGGATTTCCTGGGGATCCCTGTCTGTGTGGGCTTTGGGATTCATGTGGATGCATACAGGTTTCTGGTCCTCCCCAACATGGGCCGAACTCTGCAGTCCATCCTGGCTGAGGGGGCCGCGCCACTGTCTGAGAAGGCCGTGCTTCAGATCTCCTGCAGACTGctTGATGTTTTGGAATATATCCACGAGAATGAGTATGTCCATGCTGACATCCAGGCTGACAATGTATATTTGAATCCCACGCACCCCAATCAGGTTTACCTCGCAGGCTACCACCACGCCTTCCGCTACTGTCCTGCCACAAAGCACGTGGAGTACCGAGAGGGCAGCCGGACGCCACACGAGGGTGCTGTGGAGTTCATCAGCCTTGACTCCCACAAAGGAGCTGGCCCGTCCCGGCGCAGTGATCTGCAGGCCCTGGGATACTGCATGCTGAGCTGGCACACGGGCTCCCTGCCCTGGACACAGCAGGCGGACAATCCAGCCAAGGTCATGGCAGAGAAAGAGCGGTATAAGACAGACATCAAAGCTCTCCTGGATCAGTGTTTTGGCAGAAAGAAAGTTCCAGCCGCTATGCAGACATACCTGTGCCAGGTGATGGCCCTGCAGTACAGTGAGAAGCCTGACTACCAGGGCCTGCGGAGCGGCATGACGGAGGCCCTGCAGCGGCTGGGCGCTTCCCTTGACCAGCCCGTCAATGTCCAGATGTGAGTAGCGAGACCGCAGACTCTTGGAGGAGAGATGCTTGGACAAGTCGTTTTAAGCTCAGTGGTTCAAATAACATGCACTGTATGGAAGTATGTGACTTTTACAATTTGATTAACTGTGATTTTAGTTCCCTAATAGTGTGTGAAATTACAAAAGGCTTTACTACTGGGGCAAGGTCTGGTCTTTTTAAGGTGGTGATGTACTCCTAGAAcatcaatttcaaataaaaccagACTTTTTTAGCTAGATAGAAATGGGAAGAATGTATCAAAAAAGACACAGACTGAAAGCTTTTCTATATTGTTTTTGGTACAATAGACAAAAGAATATGAGGGAGAAAGTCTATTTACTGGTGATtaggatttcaaacaaacactggTGGGATGTTCCAGTCACTGTAAAACACGCCTCACAAACTGATACTTTATAGTGCGCCTTTCTCGTGCCTGCACGCTCGCTTTTACACTGTGAATGCTGGGAGATGGCTGTGCTGTCCTGAACTCACTGCCcttttaaacttgttttctATGGTGTTTTATCGCTTAATTACTGTTAACTTTTGTGGTTTTGGTTTAATACGACTACAATTTtcataaaatttaaataaagtttaacttgga

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08816 VRK; vaccinia related kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020361 True 2284 mRNA 0.51 15 17180941 17189251

Neighbor

gene id symbol gene type direction distance location
AMCG00020362 NA coding upstream 1915 17176514 ~ 17179026 (+)
AMCG00020360 tmem170a coding upstream 6233 17169991 ~ 17174708 (+)
AMCG00020358 NA coding upstream 138483 17041439 ~ 17042458 (+)
AMCG00020353 hsf4,LOC106560841,LOC106573731 coding upstream 161664 17003918 ~ 17019277 (+)
AMCG00020350 gnao1a,LOC100693875,LOC105926579,LOC108264367,LOC103138895,LOC106939917 coding upstream 193800 16984587 ~ 16987141 (+)
AMCG00020365 NA coding downstream 48557 17237808 ~ 17258957 (+)
AMCG00020364 NA coding downstream 72431 17261682 ~ 17271532 (+)
AMCG00020366 NA coding downstream 87299 17276550 ~ 17316918 (+)
AMCG00020369 LOC107733556 coding downstream 150505 17339756 ~ 17340976 (+)
AMCG00020368 pard6a,LOC108250860 coding downstream 175207 17364458 ~ 17365614 (+)
G62681 nudt21 non-coding upstream 134791 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 145443 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 191362 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 387061 16793664 ~ 16793880 (+)
G62564 NA non-coding upstream 534680 16644938 ~ 16646261 (+)
G62781 NA non-coding downstream 215134 17404385 ~ 17503263 (+)
G62909 NA non-coding downstream 765072 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 791782 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 798597 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 945742 18134993 ~ 18138267 (+)
G62632 NA other upstream 365084 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 576283 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 2708396 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 2948673 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 3229894 13948426 ~ 13951047 (+)
AMCG00020370 NA other downstream 244391 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 269893 17459144 ~ 17471869 (+)
G62895 NA other downstream 739077 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 869307 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 878536 18067787 ~ 18072051 (+)

Expression


Co-expression Network