AMCG00020366


Basic Information

Item Value
gene id AMCG00020366
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17276550 ~ 17316918 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020366
ATGGAATCCGGAAGCTCCTGTGACTCCCAGGTGCTGGAGTTGTGCGCTATTCCAGTCAGCCCAACCCCGCCCCCTGCTCTCCAGGCCTCTAGCAGTGTGATGACGTTGTGGCGAGGGTACGTGTTCCACAGCAGACAGCCCATCAAGGTGGAGAGCTCCTTCAGCTATTTGGAGATTTATGCCATCAACATTGCAAGCCTCAACCAGAAACAGGGGCACTTTGTAGGCATAGGGGCCGGAGCTCAGAGGCTTAAGCCCCGCCCAGCTGCCTTCTTTGCCTTTGAGTGGGTCAAATTGGGCAGAAAAGACAGTGTGTTTAAGgccGTGATAGAGACTGACAGACAGCGCTACACTCTCAGTCTGATGTCTCTGGGGGACCTGGAGCTGGTGGTCAGTCATGTCACAGCGTCACTCAAGAAGATCTTCCCAGACTCTTCCCCGGGGAAGCTGCTGAAGAAGACCCCCACTGAGCTGCACGAGCGATTTAAGCGGTTGACCACTGCTGTTGAAGAGCGCATGAATGGCAGCCAGAGGCCATGTGGTCAGTACAGGCTGTTCCCTAACCTGGACGGCCCTGAGAAGAACAGGGCCAGGAATAATAAGGCACTGTGCATTACGATAgatGTGGACAATATCTATCACATTCAGAACTGCCGGGAGTTCAACCTGCTGGACTTCAGCCACTTGGACAGCAGAGATGTGGCACTGGCGGTGGCGGCTCTGTCCTTCAACCAGTGGTTCACAAGGATCTACAGCAAAGACTTCAGGCTGagCCCTGAGGTGCTGGAGCAGGTTCTCTACATGATCAACAGAGACTTTGCGGTGAAGATGGCCGGTGCCCTCAGAGACCACTCCTGTTCTGCCCTGCACACCGTCAATCTGTCCAACAATCAGATCGAAGACAAAGGGGTGGTCGCGCTCAGCCAGCAGCTAGAGCAACTGCCCAGCGGTCTGACCCAGCTGTCCCTCTCCAGAGTCTCCCTCTCACCCAAAGGTGTGGGCAGCCTGTCACAGGCCTTCCTGGTGAACCAGTCCTTCTCCAGCTCCCTGCGGCACCTGGACCTGTCGGGCAACCCTGGCATCTTGGCCACTGAGGAGGCCACACAACTGTTTAACTTCCTGTCCTGCGTCAATGCTTTGTCTCACATGGACCTCAGCGGGACAGATTGCCCATTGGACACAcTGTTTGTCTCGCTCTCAGCTGGGTGCTGCTCCAAGCTTGCCTACCTCAACCTGTCCAGAAACATCTTCTCACACAGGAAGGTGAAGGAAATAACGCGAAGTGTGAAGGACTTCTTCAGTAACTGTGCGGTGCTCGGATACGTCGGGCTGTCAGCCACCAAGCTGCCTGCAGAGGCCCTGCGGTTACTGCTGCAAGGTCTGGCTACCAACACACGTCTTTCTGGACTGGAGCTGGACCTGAGCAACTGTGAGCTCAGGTCTGCAGGTGCCCAGGTTATTCAGGAGCACATCTTCGAAGCCAAGGCCATCGGGAGCCTGAACCTATCTGATAACGGTAATCACCTGGGAGAGCTGCTCCCGTCTGGGCTCTTCCTGTCCGCCCTGCTGCCCTGCTGGGAAAGGCTCTTGTCGGGAGAGCTGAGGCGCTTCGACAGTGACATGGTAACCCTGGTGCTTTCCATCGGCCGCAGCCACACCATCCGCCGCCTCGCTCTGGGCAAGAACTTCGCCATGAAGTCCAGGGCACTTGCCGACGTGCTGCAAAGGATCGTGCAGCTGATCCAGGAGGAGGAGTGTCCCCTGGAGTCCCTGTCCGTGGCTGATTCCAAGCTAAAGACCGGCACCACCGTGCTGATCAATGCCCTGGGCAACAACACCAGCCTGACCACCATCGACATCAGTGGCAACTGCATCGGTGACACGGGTGCCAAGATGCTGGCCAAAGCCCTACAGATCAACACCAAGCTCAGAACACTCATCTGGGACAAGAACAACGTCACGGCCAGCGGGTTCTTGGACGTGGCCAACGCGCTGGAGAAGAACTACAACCTGCAGTGCATGGCCATCCCCATGAGCGACGTGGCCCAGGCGTACCGCAGCAGCCCCGAGAGGACAGAGGAGGCCCTGCAGAAGATACAAGCCTGCCTGCTCAGAAACAGCCAGCGCCAGGCCTTCGTCTCAGATCAGGCATTCCGGCTGAAGCAGGGCCTCATCACCAGCACATCAGAGCAGctGGTACAGCGCCTGTGTCTGAAGGTCCAGGATACCGTGAGGCCGTTGACCACCTGCAGTGTCCATGAAGTGCAGAACGACATCTTGTGTGCAGAGGAAGTGCTACGTGATGCCAAGGCATCCGTTGGTCTGCTGCCAACACTGTACGAACTGGGGAGAGCGCCCTCTAGTGCTGACACCCTGCATGACCTGCTGAGCAACACCGCCAAGGCCATCACTGAGGAGATCACTGAGGAGATCCAGGACCTGGTCCAGTCCATGCTGTCGGCGGCGCAGAGCGTGTGTCCCCGGGTCACTCAGAGACCCAGTGTCCGCGAGCAGCTGGCCACCTGTGTTTCCCGCAAGTCCAGGCAGGCGACCAGCTTCGTCCAGGAGACCCTGATGCAGCAGGCAGGGACCCACATCAAGAACAAGCTCAGTGAACTCAAACTGTCCATAAGTGTCAGTCTGGCTGAGAGCATCATTGACGAGATTCTACAGGACTTGTCCACGTCTCAGCAGAAACTGGACCAGCATGTGAGCGAACACACATCACCCCCCCCTTCCACCAGTGACAAGGCGGCCCCCCGGACCAACATCCCCCAGCTGCGTGTGGTGGAGATGGAGTTCCCCACAGATGAGTACGTTCCCGTGATCTGGCGCAACAGCATCCATTCCCGGAGCATCCGTCCCGCCCCGTCTGTGAAAAAGCCTGCATCTCCTCAGCCCCCTATGGACCTGCCCATTGAAGGACAGAGACTGAAGCATTACACCCGCGCTAGGCCCAGACCAAACCGCAAGAACAAGCAACCGCCCAGCAAGCCGCAGGTGCAGGCAAATGAGAGTGAGAATGAAGGGATCGAGACCATGGGGAAAGTGGACGAGGGAGTAGAGGAGTTCTTCACCAAGAAGATCCTCCCAGACGACCCCACGAGAAGCCAGCCACCAGTGAAAGCACAACCTGTGGAGCCTACCTGCTCTGCACCCACCTCTGGCTCCAAGACCATCAAGAAGAAATTTGGGGATTTCTTTGCGTTCAAGAAGGTGAGGTCGGCACGGGGGGCTAAGGGCGAGGGGGGGCCCGAGGGCAGCCCGTCGGCAGGGGGGTTGCGGCTCAAAAAGACTTCCATCGCGGACCTGATCAGGCCGCTGCGTGAGGCGGCAAAGGCGGccgagagggagaaggagagggccGAGGACGGTGCCGCCAAGGGAGGGCCAGCCACAGCCCCCACTCCTGCTCCCCCCGCACACACACCAGCCGGGCCCCCGCCCTCTGCCATTGACCGTGAGAAGAGCCGGACACTGGACAATGACCGTGAGAAGAGCCGCACGCCCGATGCAGAGAGGAAGCTGAAGCCATCACGCCGCTCGCTCCGAGAGGGCAAATCCCAGTCGCTCATCCTGCTGCCCGGAGTGGACCCGGAGGAGCCCCTTCCCACAGCCCATGGCAAGAAGCATGCCTCCGAGggtccctcctcctccttcgaGCACAGGGTCCACGTCATGCTGCACCGCATCGGCGTCACTAAGGTGCCCCCCTACGACTCCAAGAAGAGCCAGaGCAAAGAGGGAGAACTGAGAAAGGCAGACTCTGAAGgGACCATCATGGACAGCAAACCAGAGCCACCCCCACACTTCATGAAGCCTCGTACCATGTCAACCTCCTCAGACATGAGGCGCCCGCTGCGTCCAGGGCTGGCCGTGGAGTCCCTGAGAGCTGCAGGGGAGTCGTCAGATAGGCCGTCCCCAGAGCGTCCCAGCCCCGCCACCCCCCGCCTCCTGATGCGGCCCCCCATACCAGCACCCGGGGAGAGTGGCTCCGAGGGCCCCAGGACGTCCCCCGGAGCCGCCAGCCAGCACAGCGCCTCCCCCACTGAGCCACAAACCCCGTCGCCCCGCTGCTTCCGAGAgatccccaccccctccccccgccGAGGGGCCAGCCTGGGGGAGCAGCTGGACAGGATGGAGCGCCCCCTCCATGCTGCTCCTGAAGACAGTGTGCCGAGGCCGCGGCCACGCCTGAAGCCCTCCCCGCAGCGCAGGGCAGTGTCTGTGCATGAGGAGCAGCTCAGGGAGCTGAGCACCCGGCTGGAGCCTGAGGAGCTGAGGGCGACACTCCCCCGACTTCAGAGATCGCCGGTGGGAAAACGGGCTAAACGAATAGAGCTGGAGCCCTGCACGGAGGACCAGCCTGAGGGGGAGGATGGTGACAGACAGAGTGAGGAGACAGACAGCAGACCGGCCACAGAGAAGAGGTCAGGGCCCAGGCCGCACATGGAGGGACACAGGGAAGAGCAGCTGGAGCCGCTGCCTGCGCAGAGAGCACCTTCAGACCAAAGAACTGAGCCCCCCTCCCACTGA

Function

GO: NA

KEGG:

id description
K20493 LRRC16, CARMIL; leucine-rich repeat-containing protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020366 True 4539 mRNA 0.60 39 17276550 17316918

Neighbor

gene id symbol gene type direction distance location
AMCG00020364 NA coding upstream 5018 17261682 ~ 17271532 (+)
AMCG00020365 NA coding upstream 17593 17237808 ~ 17258957 (+)
AMCG00020361 NA coding upstream 87299 17180941 ~ 17189251 (+)
AMCG00020362 NA coding upstream 97524 17176514 ~ 17179026 (+)
AMCG00020360 tmem170a coding upstream 101842 17169991 ~ 17174708 (+)
AMCG00020369 LOC107733556 coding downstream 22838 17339756 ~ 17340976 (+)
AMCG00020368 pard6a,LOC108250860 coding downstream 47540 17364458 ~ 17365614 (+)
AMCG00020377 NA coding downstream 68238 17385156 ~ 17385546 (+)
AMCG00020376 thap11 coding downstream 136010 17452928 ~ 17453764 (+)
AMCG00020380 NA coding downstream 155979 17472897 ~ 17500277 (+)
G62681 nudt21 non-coding upstream 230400 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 241052 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 286971 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 482670 16793664 ~ 16793880 (+)
G62564 NA non-coding upstream 630289 16644938 ~ 16646261 (+)
G62781 NA non-coding downstream 87467 17404385 ~ 17503263 (+)
G62909 NA non-coding downstream 637405 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 664115 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 670930 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 818075 18134993 ~ 18138267 (+)
G62632 NA other upstream 460693 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 671892 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 2804005 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 3044282 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 3325503 13948426 ~ 13951047 (+)
AMCG00020370 NA other downstream 116724 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 142226 17459144 ~ 17471869 (+)
G62895 NA other downstream 611410 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 741640 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 750869 18067787 ~ 18072051 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012798 carmil2 coding NC_007129.7 CM002902.2 22302635 ~ 22396371 (+)
grasscarp (Ctenopharyngodon idella) G79495 NA non-coding CI01000013 null 2883529 ~ 2883898 (+)
rainbow trout (Oncorhynchus mykiss) LOC110532142 carmil2 coding NC_048565.1 CM023219.2 28038922 ~ 28090334 (-)
eurasian perch (Perca fluviatilis) G67739 NA non-coding NC_053117.1 CM020914.1 38244302 ~ 38244546 (+)