AMCG00020368 (pard6a,LOC108250860)


Basic Information

Item Value
gene id AMCG00020368
gene name pard6a,LOC108250860
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17364458 ~ 17365614 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020368
ATGGATTCAGATCCCAGTGAAATGCTGCTAGAAGCAGATGAAACAGTCGCCTTTGCCACCAACTCCCTTCAGCGGAAGAAGAAGGGGCTGCCTGGGCTGCGGCCAGCCCAGCAGAAGAGCAAGCCGCACCTGATGATCGGGCTGCCTCAGGACTTCCGGCAGATCTCCTCCATCATTGACGTGGACATACTGCCCGAGACGCACCGACGTGTGCGGCTGCACAAGCACGGTTCGGACAAGCCACTGGGCTTCTACATCCGGGAtggtgtgagtgtgcgtgtgacGCGCCAGGGCGTGGAGAAGGTGCCGGGCGTGTTTATCTCGAGGCTGGTGAAGGGCGGGCTGGCGGATAGCACGGGGCTGCTGGGAGTGAACGATGAAATTCTGGAGGTGAATGGCATTGACGTGGTGGGCAAGTCCCTGGACCAGGTCACAGATATGATGGTGGCCAACAGCCACAACCTCATCATCACCGTCAAGCCGGCCAACCAGCGCAACAATGTGGTGCGCAGCAGCAAGGCGTCGGGCAGCTCGGGCTTCTCCAACGACAGCACGCCCAGCCCGGCCTCCCAGTACTTCAGTAACTACAGCACGGCAGAGGGCGAGAGCGACGAGGACGGCGATCTCATTATCGAAAGCGACAGCTTGCCGCCCTACCTGCCATCCGACTTCCTCAACGGGGACCAGGCTGGCATGACGAGACACATGCAGCCCAGCACCTCCCTGCACAGCTTGCTCTCCGACAGCAAGAACTCGCTCAGCTCACTCAACACGCACAATGGCAGCCCCAGCAAAACCAGCATCAGCCAGGAGAGCATGCGCGAGGACGGCAATGTCATCACACTGTAA

Function

symbol description
pard6a Predicted to enable protein kinase C binding activity. Acts upstream of or within neural tube formation. Located in apical plasma membrane. Orthologous to human PARD6A (par-6 family cell polarity regulator alpha).

NR:

description
PREDICTED: partitioning defective 6 homolog alpha isoform X2

GO: NA

KEGG:

id description
K06093 PARD6; partitioning defective protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020368 True 849 mRNA 0.60 2 17364458 17365614

Neighbor

gene id symbol gene type direction distance location
AMCG00020369 LOC107733556 coding upstream 23482 17339756 ~ 17340976 (+)
AMCG00020366 NA coding upstream 47540 17276550 ~ 17316918 (+)
AMCG00020364 NA coding upstream 92926 17261682 ~ 17271532 (+)
AMCG00020365 NA coding upstream 105501 17237808 ~ 17258957 (+)
AMCG00020361 NA coding upstream 175207 17180941 ~ 17189251 (+)
AMCG00020377 NA coding downstream 19542 17385156 ~ 17385546 (+)
AMCG00020376 thap11 coding downstream 87314 17452928 ~ 17453764 (+)
AMCG00020380 NA coding downstream 107283 17472897 ~ 17500277 (+)
AMCG00020379 NA coding downstream 152213 17517827 ~ 17520204 (+)
AMCG00020378 pskh1 coding downstream 172511 17538125 ~ 17549842 (+)
G62681 nudt21 non-coding upstream 318308 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 328960 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 374879 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 570578 16793664 ~ 16793880 (+)
G62564 NA non-coding upstream 718197 16644938 ~ 16646261 (+)
G62781 NA non-coding downstream 38771 17404385 ~ 17503263 (+)
G62909 NA non-coding downstream 588709 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 615419 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 622234 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 769379 18134993 ~ 18138267 (+)
G62632 NA other upstream 548601 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 759800 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 2891913 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 3132190 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 3413411 13948426 ~ 13951047 (+)
AMCG00020370 NA other downstream 68028 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 93530 17459144 ~ 17471869 (+)
G62895 NA other downstream 562714 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 692944 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 702173 18067787 ~ 18072051 (+)

Expression


Co-expression Network