AMCG00020369 (LOC107733556)


Basic Information

Item Value
gene id AMCG00020369
gene name LOC107733556
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17339756 ~ 17340976 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020369
ATGCGTTCCAGACGTGGGCGGCTCCACCAGCTCTCCTCCAAGTTTGAAGCGGAGTACCGGCGGTTCGCACTGAAGCGCTCTGGTGCGGGGGGCTTCCAGGAGTTCTACCACCTCCTGCAATCCGTGCACCAGATCCCCTGCCTGGACGTCCTGCTGGGCTATACTGACGTGCACGGAGACCTGCTGCCAATCAACAATGATGACAACTTCCAGAAAGCCCTGTCCTCGGCCAATCCGCTGCTCAGGATCATCATCCAGAAGAGAGGTAAGACCCTGCCGGTGCTGTGGGAcgaggggaggggtggggggtgtggaGGGTGGTCTAGAGGAGGGTGGTGGGAAGGCATGGCAGACCAGGTCCGTTCTTTGATTGCTGCTGGTATGCTAGTGCtgctcgctccctctctcccttgtCCTCCTGGGCAAATGCTGCAAGCGCTCAGGCGAGTGGTGGCATTGGAGGTTCCTGGCGTCGAGAGGTTTGACTTTGAGTTGTAA

Function

NR:

description
PREDICTED: partitioning defective 6 homolog alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020369 True 498 mRNA 0.60 2 17339756 17340976

Neighbor

gene id symbol gene type direction distance location
AMCG00020366 NA coding upstream 22838 17276550 ~ 17316918 (+)
AMCG00020364 NA coding upstream 68224 17261682 ~ 17271532 (+)
AMCG00020365 NA coding upstream 80799 17237808 ~ 17258957 (+)
AMCG00020361 NA coding upstream 150505 17180941 ~ 17189251 (+)
AMCG00020362 NA coding upstream 160730 17176514 ~ 17179026 (+)
AMCG00020368 pard6a,LOC108250860 coding downstream 23482 17364458 ~ 17365614 (+)
AMCG00020377 NA coding downstream 44180 17385156 ~ 17385546 (+)
AMCG00020376 thap11 coding downstream 111952 17452928 ~ 17453764 (+)
AMCG00020380 NA coding downstream 131921 17472897 ~ 17500277 (+)
AMCG00020379 NA coding downstream 176851 17517827 ~ 17520204 (+)
G62681 nudt21 non-coding upstream 293606 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 304258 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 350177 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 545876 16793664 ~ 16793880 (+)
G62564 NA non-coding upstream 693495 16644938 ~ 16646261 (+)
G62781 NA non-coding downstream 63409 17404385 ~ 17503263 (+)
G62909 NA non-coding downstream 613347 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 640057 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 646872 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 794017 18134993 ~ 18138267 (+)
G62632 NA other upstream 523899 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 735098 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 2867211 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 3107488 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 3388709 13948426 ~ 13951047 (+)
AMCG00020370 NA other downstream 92666 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 118168 17459144 ~ 17471869 (+)
G62895 NA other downstream 587352 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 717582 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 726811 18067787 ~ 18072051 (+)

Expression


Co-expression Network