AMCG00020370



Basic Information


Item Value
gene id AMCG00020370
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17433642 ~ 17442711 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00020370
CGCTGTGTTTACATCCATGTTGAGTTGTGTTGGTCGTGGGTTCACATTACTGACAGTATACAGAAACAGCAAGGATGTCGCTGCAAAAGGAGTGCCGaggAATGCCCTCAAGCTTTACAAGTGGAGCTGTACAGCCAGACAGCAGGAACCGGCAAGAAAAGTGCAGTGATGCCATGGGCTCCCTATCACTGAGAGGAATAAGTGGAGCTGGTGTCACGGGGCACCTGTCCACCTGGCCTGCCCACATAACCTCACACACGGTCCAGCCAGGACGCAGACACCCACTGCCACCCGAAGCCAGGATCCATGGCTGCAGGGAGGAGTCCTCGGGATCCGTCTCCAAGCCCCGTTTCTTGGAGCAGCTGGAGAATTACCTGCGGAGAGAGCTACAGACCCTGGACCCCAGCCAGCCTGACGCACAGGAGTGCAGACTGCAGGCTTACCAGGAAGTGTTTGGCTATTTCATTGAGGACTTTAAAACCTACAAGCCATTACTCGCAGCCATCAAGAACGAGTATGAAGTCACGCTAGCTCACCTGAGGGGTCAGATCCGCAGCCTGGAGCCGCTGCGGGCGATGCTGGCGACGGTGTCGGAGCAGTGTGAGCAGAGGGTACTGGCCCTGGGAAAGGAGGAGCGGGCTGAGGTCAGGGCCCTTAAGCAGGAGAGGAGCCGCCTGCTCTGGGTTATCGAGGAGATGAGGGAGAGCCAGACCGGCCTGCAGGCCCAGgtgtcTCGGCTGCAGGAGGAGCTGGCTGCGCAATACCTCCTCTATAGGGAGGAGCGTGATGCCCGTAAACTGCTTGTGGCTGACATCAGTAACATGAGATGCCTGCAGGAGGACCAGAAGAGCCCCAAGCAGGAAGTGGAGGCGGAGGAGGACGTGGTGCGGCTGCGGCTGGCTCTGCGCGTGGCGCGTGAGGACCTGACCCGGCTGCAGGTGGAGCTGAACCGCGTGCAGGCTGAGTACGGGGATGTGGTACCGCGCCGGGACTGGGAGCAACTGGACTCCACACATAGGGACGCCATGAACAAGCTGGAGGTGCTGCAGAAAGACTATGCCCAGGTGAAGCTGGAGCTGGACGCCCTGCTGGGGGTGCACAGGCCGCTTGCGCAGGAAAGGGACAGCCTGCAGGCCGAGTTACAGCGCTTCAGATCTGTGTCCACACCCCGGCCGCGCTGGGACAGGTGTCAAGatGTGATCTCTGGGGGCAGTGAGCGCTGGGCTCAGCTGTCCCAGGGGCAGTCAAGTGACCAGCTGGTGGGCATTCTTCTGGAGGAGCTGACGGGAGGGGTGTCCAGAGAGAAGGATATCTTTGATGGGCTGGGTACAGGAGAGCATGTCCCGGTGTACCTGCGCTACGATGGACAGATCAGAAACCTCAGGCTGAAGAAGGCAGATATAGTGAACACCATCAAGGAGGTCTGGAAGGAGAAAACCACAGAGGATGAGCAGAGAGAGGATAGGAGCAGCCTGGCTGAGTTTCTGCGTGGCTTCCTGGAGAAGCAGTATGGGGAGCGGGCGGCACAGTGGGCCTACAGCTTGGTGGAGGGGTGCAGGCAGCACCGCGACGATGACTTCATCAGCCTCTTCCTCAGTATCCTCACAGGAAAGgtggATGAGAGCGTGTATCACGGGCAGATTCGCCTGCTGTCGCACCTGCTGAAGGAGCTGATCCACAGCGACGCCACAGAGAGCGGCTGCCTGACCCCACCGGAGCTCAGCGAGGCCCTGAGGCGAGCGTTCCCTCTCAAGACGGAGGGGCAGATTGAGGAGCTGGTGCAGGCTGCTCAGGCCCAGCTGGAGGCCACGGGGGGCAGCATTGCCTATCAGGCCTTATTCAACGAGGATGGAGAAGGAAAACCTGGGGCCTTCATTAAGCTGGTGAGAAACCAGGCCAACGCCGAGAAGCGCAAATACCTCACGGAGCTGAGGACCCAACTGTGCGACAAAGACAAGGTCGAAGTGGCAGAACTACGGACAGCCATTCAGAGTATCGACCCCTCGATCGACCCCCAGACGCTGGACGGCTACCTGTCCTTGGCCTTCAAGACACCGACCGCTCAACTGGAGCAGACGCCCCCCCTGGACACAGACTCAGTCGTGCAGCGCCTGCTGGCTGCCGATGTGCGGAGGGTAGGACCCCCACAAGCACAGCCCTGA
>TU78603
TGGCAGCGCAGTGTACACAGAGCCGCTGTGTTTACATCCATGTTGAGTTGTGTTGGTCGTGGGTTCACATTACTGACAGTATACAGAAACAGCAAGGATGTCGCTGCAAAAGGAGTGCCGaggAATGCCCTCAAGCTTTACAAGTGGAGCTGTACAGCCAGACAGCAGGAACCGGCAAGAAAAGTGCAGTGATGCCATGGGCTCCCTATCACTGAGAGGAATAAGTGTGAGTAATGACAACAACAgccataatcataataatactacataaataaatacaacaggaCTATCAACAGACGAG

Function


GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00020370 True 2162 mRNA 0.60 16 17433665 17442711
TU78603 False 301 lncRNA 0.46 2 17433642 17434200

Neighbor


gene id symbol gene type direction distance location
AMCG00020377 NA coding upstream 48096 17385156 ~ 17385546 (+)
AMCG00020368 pard6a,LOC108250860 coding upstream 68028 17364458 ~ 17365614 (+)
AMCG00020369 LOC107733556 coding upstream 92666 17339756 ~ 17340976 (+)
AMCG00020366 NA coding upstream 116724 17276550 ~ 17316918 (+)
AMCG00020364 NA coding upstream 162110 17261682 ~ 17271532 (+)
AMCG00020376 thap11 coding downstream 10217 17452928 ~ 17453764 (+)
AMCG00020380 NA coding downstream 30186 17472897 ~ 17500277 (+)
AMCG00020379 NA coding downstream 75116 17517827 ~ 17520204 (+)
AMCG00020378 pskh1 coding downstream 95414 17538125 ~ 17549842 (+)
AMCG00020381 mbtps1,LOC107596929 coding downstream 116826 17559537 ~ 17584315 (+)
G62681 nudt21 non-coding upstream 387492 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 398144 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 444063 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 639762 16793664 ~ 16793880 (+)
G62564 NA non-coding upstream 787381 16644938 ~ 16646261 (+)
G62909 NA non-coding downstream 511612 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 538322 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 545137 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 692282 18134993 ~ 18138267 (+)
G62989 NA non-coding downstream 754868 18197579 ~ 18200808 (+)
G62632 NA other upstream 617785 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 828984 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 2961097 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 3201374 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 3482595 13948426 ~ 13951047 (+)
AMCG00020371 nutf2 other downstream 16433 17459144 ~ 17471869 (+)
G62895 NA other downstream 485617 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 615847 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 625076 18067787 ~ 18072051 (+)
G63045 NA other downstream 889858 18332569 ~ 18334032 (+)

Expression



Co-expression Network