AMCG00020371 (nutf2)


Basic Information

Item Value
gene id AMCG00020371
gene name nutf2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17459144 ~ 17471869 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020371
ATGCGCCGACAGGGAGGCGGACCGACTCAGCCGCGCTTGGTGATCGCCATAACTGGGATACAGGGAATGGGTGACAAGCCAATCTGGGAGCAGATAGGATCCAGCTATGTGCAGCACTATTATCAATTGTTTGACACAGACAGGACCCAACTAGGAGCAATATACATTGACGCATCATGCCTTACCTGGGAAGGACAGCAATTCCAAGGAAAAGCAGCTATTGTTGAGAAACTGTCTagcCTTCCCTTTCAAAAAATTGCTCACAGCATAACAGCACAAGACCACCAACCCACTCCAGACAGCTGTATATTGAGTATGGTAGTAGGACAACTAAAAGCTGATGATGACCCCATAATGGGATTCCATCAGGTATTCCTCCTGAAGAATATCAACGACGCCTGGGTGTGCACCAATGACATGTTCCGGCTGGCACTGCACAATTTTGGCTAAGGGCTTCAGGATGGGCAAGGGGGaaagggaggggaagggggtgaGGGTtgacatccccccccccccccccccccccccccccccccccccccccccccccccccccc
>TU78611
GCGGACCGACTCAGCCGCGCTTGGTGATCGCCATAACTGGGATACAGGGGTAACTGGAGTGGGTGCTCGTGCCTGTTGCTGGGTGATTCAGAATGGGTGACAAGCCAATCTGGGAGCAGATAGGATCCAGCTATGTGCAGCACTATTATCAATTGTTTGACACAGACAGGACCCAACTAGGAGCAATATACATTGACGCATCATGCCTTACCTGGGAAGGACAGCAATTCCAAGGAAAAGCAGCTATTGTTGAGAAACTGTCTagcCTTCCCTTTCAAAAAATTGCTCACAGCATAACAGCACAAGACCACCAACCCACTCCAGACAGCTGTATATTGAGTATGGTAGTAGGACAACTAAAAGCTGATGATGACCCCATAATGGGATTCCATCAGGTATTCCTCCTGAAGAATATCAACGACGCCTGGGTGTGCACCAATGACATGTTCCGGCTGGCACTGCACAATTTTGGCTAAGGGCTTCAGGATGGGCAAGGGGGaaagggaggggaagggggtgaGGGTtgacatccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccatcccctccctctcccagtgGTCCTCCCAAAGCCATtctgacactctctctctctctctctctcaccctctcaccctctctctttctctctctctctctctctctctctctctctctctctctcactcgctctcgctctctgttCAACCTCCTTCACCGGAATCCAAATATCTtacacaagcaaaacaaaacagaccgAACCGCCATGCAGAACCATGCAAACCTCTGCTCAGACAAGGTGTTTTCCTTCACTGAGTCGCTGCAGTCTGTGGGTACTTTCCTCTTCTATTGTGCATGATGTTTGGAAGCTAGAATGGCCGCACATCACGACgccagtaaatacatttttttttttttattaggtgggggggcgggtgggggtttgttcagttttacttttttaaattttattttccGACTTCCACTTCTCTTCTCTGTTGTCTTGTTTTCCCAGTCCAGTGTGTTGTTACCAGCATGCCTTAGAGAATAAAGTaccatcttttttattttatttattttatatttactctCCGCATCAATGTACTGACAGGTTGCTTTCTCGATCCAAAGAACCGATACATCGCCTACCTGCAGTCAGGCCCCTGGTTTCCCCCACTCACCTATTTCCCAGGCTGTTACTTATGTCCAGACATTACAGCTGGAGCcagaatacacaataaaaccttgacattttcttattaatggaatcttattatttttcctaCTGTTTTCTGGgtatctctgtctctgcctcgtttttctcccttttctcctcttgttgttgttgttttattttatttatttattaatttttgtaCTTCCTCCGAAGCAGATCTCGgtgaaatgcatgcatgctcATCTTCGGACTCTTTTCCCCCTCAGCAGACTCACCTTTCATATCTCAAAGATGTAAGCCATAAATACAGAGAGATGACAATCGACAGATATTCGCCCCACACTGCTCAGTGCTGACAGCTGGATAAAAGACAAACTGAGTTTTTGGTTGCTGTGGGATGCATAGCTATTGCAGAAGAgtgattttgcttttttgttattacaatttttaaaaccagttggggaaagaaaggaaaaaaaaaaaaaaaacacaagcccCTTTCATGTGGAGATGTGCATAATGGAGAATGGGCTACCTGTTTCTGTCCAGTACAACAGTTTGTTATAggtcatccatccatccatctttatTCAATAAgtgcttcatccagtacagggtcacggtGAGCTggagccccccctccccaataGGCACAGGGCGCGCAGCTGGGCACACCCTGGACGGGACGCCAGTCTGTGGtatatcatgcatttatttattctacaagTCTTTGGctcatattttcttctttattttatcttttgccCTTTCCTTGcgcatatttatttgtattgatcacTGCCCCCACAGGAAGGTGACATACAATAGAcggaacaaaaatacaacagagaTTCCAGGGGTCTGTTTTTCATACCAGTACAGCACCAGATTTGTACAGAATAGTTCAGGATGTTACACTATTATATATTGAtagatataatttataaatggagGATGTTTCAAACTTGAGCAGTTCAGTCAaacctgtttttattgtttaatttatgtttttaatccCTGCTAAGATTATGCGCAATGAAGGAAGGAGAGATGCCGCTATCATACTTAGTACTGGTAACTGCCAACATACACTTGGAGAGAAGGTCACTGTAGTACAGGGGGGTAGCGCAAAAGGCATGAGCAGCTGTAATAAactagcttttttatttttattttacacatggGTTCATTTACCAGttatttcctttaattacaGAGAGGACTGTGGCCATAGGCTGGTGAAGGAAGTAGAAGAAATATAGTCAGCCCAATTAAAGTGTTCAAATTTGTTCTGGGAACTTCAACATGACACACAAGCCATTAAATATTACACCACCTGTGCAGGATATGTATCACTGAATTAGGGTTTCTTTACGGATAACCTTTTGGCCTAAGTCTGCGTGTACTGCAATAACAgtggtgtgattttttttttctttttttttggacacaggaacaacaaaaaacttaaataatacaatcttaATAGGATTCCcttctgtatgtactgtatttgacATAGCATTAAGACTAACTCTGGCAAAAGTATTCAAGAGGGACACTTTGAAGGCAAGACAAAGTTCTATTTGTTAATGGTCTGTTTGCATACTTGTGTTGGTTTACATTCAGCATGGttattaaaatgctgaaatcaATCCATTGTTATAtctttttatttcacatgtGGGTTGGGATGCAATAAGTCTTCAGCGGGTTGATGCTTATTTGCTTCCCTATGAGATCAGCTTTCAGTTGTGCAGCtacaattaataaaactga

Function

symbol description
nutf2 Predicted to be involved in protein import into nucleus. Predicted to be part of nuclear pore central transport channel. Human ortholog(s) of this gene implicated in diabetic retinopathy. Orthologous to human NUTF2 (nuclear transport factor 2).

NR:

description
PREDICTED: nuclear transport factor 2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020371 False 557 mRNA 0.55 5 17459144 17469465
TU78611 True 2987 TUCP 0.43 5 17459160 17471869

Neighbor

gene id symbol gene type direction distance location
AMCG00020376 thap11 coding upstream 5380 17452928 ~ 17453764 (+)
AMCG00020377 NA coding upstream 73598 17385156 ~ 17385546 (+)
AMCG00020368 pard6a,LOC108250860 coding upstream 93530 17364458 ~ 17365614 (+)
AMCG00020369 LOC107733556 coding upstream 118168 17339756 ~ 17340976 (+)
AMCG00020366 NA coding upstream 142226 17276550 ~ 17316918 (+)
AMCG00020380 NA coding downstream 1028 17472897 ~ 17500277 (+)
AMCG00020379 NA coding downstream 45958 17517827 ~ 17520204 (+)
AMCG00020378 pskh1 coding downstream 66256 17538125 ~ 17549842 (+)
AMCG00020381 mbtps1,LOC107596929 coding downstream 87668 17559537 ~ 17584315 (+)
AMCG00020383 NA coding downstream 114268 17586137 ~ 17591308 (+)
G62681 nudt21 non-coding upstream 412994 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 423646 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 469565 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 665264 16793664 ~ 16793880 (+)
G62564 NA non-coding upstream 812883 16644938 ~ 16646261 (+)
G62909 NA non-coding downstream 482454 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 509164 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 515979 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 663124 18134993 ~ 18138267 (+)
G62989 NA non-coding downstream 725710 18197579 ~ 18200808 (+)
AMCG00020370 NA other upstream 16433 17433642 ~ 17442711 (+)
G62632 NA other upstream 643287 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 854486 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 2986599 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 3226876 14195784 ~ 14232268 (+)
G62895 NA other downstream 456459 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 586689 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 595918 18067787 ~ 18072051 (+)
G63045 NA other downstream 860700 18332569 ~ 18334032 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 2125334 19597203 ~ 19602324 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location