AMCG00020372


Basic Information

Item Value
gene id AMCG00020372
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17392557 ~ 17402108 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020372
GCGTGTCCAGGTCATGCGTGCAGTGTGCGCAGACTCCCTTTGTCCTGttcgcacaaacacacagaaagacacgGAGTGGGGGAAGACATGGGCTGCGACTGAACCAGCTCGGCCTCTGCACACAGGAGGGACGTCTACTTGCAGTGCCTGCAGAGGTCCAACCAGGAACCGGCTCCGCTCCCATCGGTGCAGCggcgcagacccgcgcagatctgcggacgGCGGCGGAAACGCGAACGCGACCAGGAACTCGGACACCCGCACATCCTGCACGGGGACGCGCACCCCCAGCCCGCCAGGGGCCAGGCGCGTGCCCGTGGAGAAGACACCGAGCGGCGCGGCGTCGCTCCCCCGGGCTCTGGGGACCAGGAAGGGACACGACACCCCGACACTCCCGCTCCGGCGCGGCGGTATTTGGAGGACACAGCCgaggtcccccccccccattcccGTCTCTCAAAAGCCTGCAGGTCTGGAGCAGCAGCGTGTGAGCACCAGTATTGCTGGCCTGGCTGTGTGCTGTTGTGGgcaggtgaggaggaggaggagggtggcgGCGCAGTGAGAGGGGATGTGCGCTGGGCTGTGAGCGCAGTGCGGAGAGGGCCGACTGCGGGGCAGCCATGCTGCCGGGCGTGGGCGTGTTTGGGACTGGCAGCACGGCCCAGGTGCTGGTTGCCCTCCTGCGAGATGCGGGCTTCTCAGTGCAGGCGGTGTGGGGCCGCACGGACGAGGAGGCCCAGCAGCTGGCGCAGGAGCTTGCCATCCCCTTCTGCACCAGCCGCACGGATGACGTGCTACTACACCCTGACGTCGACCTGGTCTGCATCAACATCCCACCCCCACTCACCCGCCAGATCGCCGTCAAAGCTCTCGgGATTGGGAAGAATGTGATCTGCGAGAAGGCAGCCACATCGGTTGATGCATTCAAGATGGTGACGGCTGCCCGCTACTACCCACAGCTGATGAGCCTGATGGGCAACGTGCTGCGCTTCCTACCAGCCTTTGTGCAAATGAAGCAGCTGATCGACGAGGGCTATGTGGGCGAGGTGATGGTGTGTGACGTGCGTGTTTACTGGGGCAGCCTGCTGAGCAAGACCTACAGCTGGCTCTGCGACGAGCTGATGGGTGGCGGCGGACTGCACACCATGGGCACCTACATTGTGGACTTGCTGAGCCACCTGACCAGCCGGCGGGCGGAGAAAGTGCACGGACTGCTCAAGACCTTCGTGCGGCAGAACGGCGCCATCCGGGGCATCCGCCAGGTCACCAGCGACGACTTTTGCTTCTTCCAGATGCTGATGGAGGGTGGCGTGTGCAGCACCGTCACACTCAACTTCAACATGCCTGGCACCTTTGTGCACGAGGTGATGGTAGTCGGCTCGGCCGGGCGGCTGGTGGCTCGGGGCACGGACCTCTACGGCCAGAGGAACACGGCCTACCAGGAGGAGCTGCTGCTTTCGGACACCTCGGTGCTGTGTTCGGTCGGGGggctggagaaaggactgcgGGACATCCCACTGCTCTACCTGAAGGGCATGATGTGCATGGTACAGGCCCTGCGGCAGTCCTTCCAGGGCCAGGAGGACCGGCGGACCTGGGAGCTGAAGCCTCTGGCCATGGCCGCCTCCTTTGAGGATGGGCTGTACATGCAGAGCGTGGTTGATGCCATCAAGAGGTCCAGCCGCTCGGGTGAGTGGGAGCTGGTGGAGATCATGACCGAGGAGCCAGACGCCAACCAGAACTTGTGTGAGGCGCTGCAGAGGAACAACCTCTGAGAGGGTCCTTGTTGCCCCTCTGTTCCGCCCCCTGGCTCAGCCTCATCCATGTCGGCTTCCCTTCATTCATGGGTTGTCATTATCCTTCCCgttggctgtttttttctttctatctccTCTCCATGGCTTTGATTTGCACACAGTATGCCTCTCTTCTTCAAAGCGAGGTCTTGCTTGGTAATGTGGAATTGGCAGGGCCCGACATAAATCCCTGCAATTTAACTACTGATGACAGACAAGGACTTTGTTCACCAGAACATTCTGGACCCCCGAAGACTGAGAAGTTTATCATATCTGTTCAGATCTTTTAACATCCTGTAGGAAAGtaattctaatatttttttaaaaagcagattaTTTTTGACTGCTTAAAATGTTAAGTTTTCCCCCATTGCATCACACTTGTTTACGACTGTCCCTTGTGTGAATAGTGTTCTCAGGTTTTCAGCTTGTTAAGGAACCTTTAAAAGGTTAGTGACCTCTTATCAGGGTCACACAATGATTTTATACTTGATAATTGGAGGCCGTATTTTTGCCTTACTCCTATCTCAATGGCATTTGAGCTCACTCGCTTGCTAGGCATGCTGACGTGTCCCAGTCTCTGCCTGAGGATAATTTCTGGCTGACAGAGTACACTTGAAGTGTTGGTATGTCATACTAGTGAAAGCAAATCCTTTGCTGTAGCAGGAACGGCTTCGCAGGGCTGTGAAGAATGACCCCTGAGCCTCAGCCCCTCTGTCCTGAGCTGTTTGGCCTCCGACAGCAGAACTGGCGCACGTTATCGCTCTACAGCACTGTACTCCAATGCCGACCTGCGTATTTCCCACATCAGTGACTGTACCCTGGCAGCTGATAAGAGTATTTCAGAAGAGTTTCTCTTGTGTGAAACTGAATTGCCAGTCTTGTTTCTGCCTCTTGCagggctctctctctcaacccgCACCTAGGCCTAGCTGGCTTCAGCATGAAAGAGTCCCAAGTTAATGTGTACGTCGATGAGGTCCGGTCTCCACATAAGACTGAGAATGAGGACATTGCTTTGGCACTAGGTCGGCTCATTTGGAAGCCATCTCCTGTACAGATTATACTACTGAGTCCATTCAGCTGCTCATTCCACTGTGGCCTCCCTGCCTGCTCTCTATTGCTCCGCTATCCCTGCCTTTTGTCAGATAAATGCTAATTAAactcttaaaaaatgtaatgttaaccTGTATACAGTATAACATATGTATGAGGGACCTACTTAGGGCCCTAGGCTGCACATGCAATATACTGTCTCTGCTCCAAAGTGAGAGGCAAGCCGAGCCTCTTGCCATGTCTGAGAAGTGaaaccgtgtgtgtgtgcgtgcgtatGTGCGTGTGCATTACGGGGCTGAGCAGTTTCAGCACTTGAAATCCTACGCATATCTGAAGATCACTCAAAGAAGAATGTGCCAGGTTTTCTTTGGGTGTTTTAGCTCACTGTCTGGGAGTCACTACCCTTAATTACCTAATTCAGTTTATTAATAGACGGGATGTGGGACAACAGCAGCCAGGGACAGTCCTCTCCCGTCTAGATTTACCTTTCCCCAATAGTTGGGGATTCAATCTGTATGATCATTTCCCCCCCCTCTGTCTCCTGTTGTTGTTTGGAGATTTGACATATTACATGCtgcattgtctgtgtgtgtactggTGGTAGTGCTgaacactgtatttattttatttttttgttgttggttgtttttatacactggggtgggggggggggttcattACTATTCTAAACTAATTCAGGGTAAATTTGTTGGAAGAGAggaaccacaacaaaaaaaaaaactttctaaTCGGCTGTACATAGTTTGTAGTAggatatttattgtgtttttctgacaTGGGTTATTGCTGCAAATGTCTGGACTCTGGTGATCTCACTGTAAGATGGGAATCCGAGCCCTAATCCATACTGTCTATTTGAATgtaacaaagaaattaaataaagttctTGTagctacattttacattaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020372 True 3786 mRNA 0.54 3 17392557 17402108

Neighbor

gene id symbol gene type direction distance location
AMCG00020367 NA coding downstream 67026 17317097 ~ 17325531 (-)
AMCG00020363 NA coding downstream 252788 17138662 ~ 17139769 (-)
AMCG00020359 NA coding downstream 318315 17072789 ~ 17074242 (-)
AMCG00020354 NA coding downstream 335315 17049350 ~ 17057242 (-)
AMCG00020355 nudt21,LOC107660760,LOC107690386,LOC107721012 coding downstream 360445 17028087 ~ 17032112 (-)
AMCG00020374 ranbp10,LOC106560827 coding upstream 6446 17408554 ~ 17415648 (-)
AMCG00020375 ranbp10,LOC107726299,LOC107694918,LOC107733562 coding upstream 23203 17425311 ~ 17432646 (-)
AMCG00020373 NA coding upstream 41377 17443485 ~ 17451798 (-)
AMCG00020382 NA coding upstream 147643 17549751 ~ 17559095 (-)
AMCG00020385 necab2,LOC106936069 coding upstream 257753 17659861 ~ 17673675 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding downstream 22111 17364823 ~ 17370446 (-)
G62715 NA non-coding downstream 216722 17120154 ~ 17175835 (-)
G62675 NA non-coding downstream 373005 17018790 ~ 17019552 (-)
G62660 NA non-coding downstream 401843 16990267 ~ 16990714 (-)
G62659 NA non-coding downstream 403273 16987319 ~ 16989284 (-)
G62880 NA non-coding upstream 446050 17848158 ~ 17851113 (-)
G62951 cnot1 non-coding upstream 566125 17968233 ~ 17969691 (-)
G62981 NA non-coding upstream 735372 18137480 ~ 18138298 (-)
G63015 NA non-coding upstream 781900 18184008 ~ 18186050 (-)
G63057 NA non-coding upstream 955717 18357825 ~ 18358910 (-)
AMCG00020346 nup93,LOC103368977 other downstream 574790 16794996 ~ 16817767 (-)
G62618 NA other downstream 599390 16792866 ~ 16793167 (-)
AMCG00020336 NA other downstream 767587 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 1116984 16272451 ~ 16275573 (-)
G62415 NA other downstream 1137438 16252788 ~ 16255119 (-)
G62853 necab2 other upstream 208556 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 585073 17987181 ~ 18015862 (-)
G62961 NA other upstream 604060 18006168 ~ 18039960 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 2886462 20288570 ~ 20299843 (-)
G63464 NA other upstream 3910094 21312202 ~ 21312605 (-)

Expression


Co-expression Network