AMCG00020373


Basic Information

Item Value
gene id AMCG00020373
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17443485 ~ 17451798 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020373
CGTTAACTTCCGCTGATGAACAATCGCGAGGTTTGGCTTGAATTTGCTGGCGGGATGAGCGACACTGAAACGAAAATTCAAAACGTAGATAACTGTTAGATTGGACTCTCACTGGATACAGAACCAAATAAGAAATGAATCAACACATATgaggaatattaataattttctgTCTCAAATCGCCGAGGTGCTGATCTAACTAACAAAGACGTCTGGATTGCACTAAGGAAACAACGGTTGAGTGACCATGGACTCCCCAGAGGCTGACATCTCGACACGCACCCTGCTGAGGCAGGTGCTGCAGACAGAGCTGCCCCGCTCCCCCGTCACACGCAGTGCCCAGGCTTCCTCTCCCAGGAGCAGACGGAGTGCCAAGCTGCGGAGGAGTGCCGCCGCGGTCCCCTCCCCTCACGTAACCCTGAGGAATAAACTCAAGCAGACCCTGCGGGAGAGTGTAAGAAAGGCCCCGAATGATTCCAGCAGTAAGAGGCTGTCCACCGTGAGCAGGCAGGCGGTCAGCCCTGCAAGTCTGCCTGGCCACGACTCTCTGGATGAGGTCACACCCCGCCTGCTGCTCCGCAAGATCATTCTGACAGAGCCGGAGGTGTCTCTGCTGGTCCCAGACAGACCTGCGAGGGATGATCCTGAACTACAGCCCAGTGAGTCAAGTCCAGGCAGTAACAGACCCAGCACTGGGACCCTAGACCTCGACCTGCCAGACCTGTCCACTGTAAACCTTACCGTGGCCGTCCAGAGGATCAGCAGGAAGAGGCCGAAGAGGAGAGTCAGCGTGTCTCAGTTTGAGAGGAGGATGGAGCAGGATGGAGAAGACCTGGAAATCCAGCAATCTGGCACTGAGGACAACCTCTCCGAGCTGTCCGGGGGTGCGGCCAGCTCTTTCAGTCTGACGCTGAAGACACCTCACATGGATCTGGATTCGGGCAAGCCGGGGCTGCAGAGGAAAGCCGTGAAACGCAAAGCCATCTGCGTGGAGGACTTCGAGGAAGGTGTTCAGAATTACCTGCACAACAAGAGAAGCCCAGGTTTGGAGAAGAGCACTTCCAACCCACACAAGACTCTGAGCGAGACGGGCGCCCTGGAGACATTCACCCTGGGCTTTAGCGCGCTGACGGTCCCTGACATGACTGACAATCTGATGAGCAACACCAAGCTGTACGACCACACGAGCTTCATCCTCCAGACTCCCCATTACGCGGCCTCCCTCCCACTGGGGCCCAGGGAAGACAGCGGTACCAACCAGACCCTGGATGGAATGGGGcctgaagaggaggaggggccAGTTGCAGAGAGGAAGGTGGAGGGAAGCTGGTTGCATCCACAGACTGAGgtagagggagaggaggagaaggcaGAACAAGACCTGGAGGAGACTGGTGTGGAGACCCTAGAGGGCAGCCAGCAagtgggagaggagggagacagagaggaggcgggactggaggaggaggaagaaggagaggaggagggagaagaggTGGCAGCAGAGTCCCAGAGAAGGATGGGCgaggtggagggagagagcagaggcTTGACAGATCAGGAGAAAGAGGGTTCTGGTATTGTTGTCAATGAAGGAGACTTGGATGAAATGCCACAGGAGATGGAGGTGGCAGGAGAagctgaggaagaggaggaggagcagcagcaggctgAGCACATCGCACGCAGAGCCACCCGCTCGCAAGGTGGACTGAAGCTGAAGAGCCCTGACTCGCTGCAAGGGGGGAAAGGGGACGGCAGTGTGATAGTGGACGGAGAGCTGGCTGATGAAACCACCAGAAACTCGCCCACCCCTCTTGGCTCTCCTAGAGGAGCCTCACTGGACGAGGGGCCACCTAGTTCCTCGCCACAGCCAAACCGCTCCAGGAGGACTCTTTCTGGAGCCGACTCAGAGCAGGGAGGAGGATCAGGGGTGAtgggtgagagtgagagtgagagtgaccTCCACGCAGGAGAGGAGTGGGACAAGGAAAACTCTGCTCCCGTTCCCAAGCTGGAGGCCTCTGCGCCCCCAGGGACACCCATCCCTCACTCCACCACGGCAGTGGAGCTGGGGCTTTCAGGCCAGGATGAAGAAGAACAGCTGTCCTCCAGCGACGAAGAGGAGGATGGATCTCAGAGTGAGGGTAAGAAGTTGGCTCTGACTGCTGCAACCACGAAGCCCCCGAGGAAACCCCGAGCCGCCTCAGCCAAGAAGGAGCCTGGTCTCCCCAAGAGCTACATCATGTCAGTCTTCACGCACTTCGCCAAGACCAAGGTGTCCCGGGACATCTACCCTGTCCTGAAGGAGACTTTGGATAAGTATTTCGATCGCCTCTCAGATGACTTGGAAGCATACGCAAAACACGCCAAGAGAAAGACCATTGAAAAGGAGGACGTGGAGCTGCTTCTGAGGAGGCAGGGCTTTGTGACGGAGCGCACACCCCTCAACGTGCTGATTGAGCGCTACCTTCCTCTGCAGTACCGGCAGCTGCTGATCCCAGTGGCTACCAGCGGGAATAAGGTTATTCCCAAGATGTAAAAGTTTGttagtgatttgttttatttaatacaaacaaaattatataaactgTGATATTAGTGCCAACATGGGTTTCTTTTCACTGTCCAGCAAGACCACACTGATCATGCTCAAGGCGCTATTGTCGCCAACAAGACATCAAATATGAAAGCAGTCGTCTACTTATAGGACTTGAAATCTTGTAATCTATCAAGTGCAAAAACAGAGTTTCACGTAAAACAGAATTGCCCCCAGtatcttttctatttttaataactttctgaatgtatatattctttaatgTAAACGTCTTTTATCAATGTTTGTCCTTTGCTTGTGTTGGGGGAGGGAGATaatttcaagttttattttattttattttgattatatatttcaagtcagaataaag

Function

GO: NA

KEGG:

id description
K11512 CENPT; centromere protein T

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020373 True 2930 mRNA 0.54 12 17443485 17451798

Neighbor

gene id symbol gene type direction distance location
AMCG00020375 ranbp10,LOC107726299,LOC107694918,LOC107733562 coding downstream 10839 17425311 ~ 17432646 (-)
AMCG00020374 ranbp10,LOC106560827 coding downstream 27837 17408554 ~ 17415648 (-)
AMCG00020372 NA coding downstream 41377 17392557 ~ 17402108 (-)
AMCG00020367 NA coding downstream 117954 17317097 ~ 17325531 (-)
AMCG00020363 NA coding downstream 303716 17138662 ~ 17139769 (-)
AMCG00020382 NA coding upstream 97953 17549751 ~ 17559095 (-)
AMCG00020385 necab2,LOC106936069 coding upstream 208063 17659861 ~ 17673675 (-)
AMCG00020392 NA coding upstream 256315 17708113 ~ 17761880 (-)
AMCG00020391 NA coding upstream 324186 17775984 ~ 17794499 (-)
AMCG00020390 NA coding upstream 353733 17805531 ~ 17810647 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding downstream 73039 17364823 ~ 17370446 (-)
G62715 NA non-coding downstream 267650 17120154 ~ 17175835 (-)
G62675 NA non-coding downstream 423933 17018790 ~ 17019552 (-)
G62660 NA non-coding downstream 452771 16990267 ~ 16990714 (-)
G62659 NA non-coding downstream 454201 16987319 ~ 16989284 (-)
G62880 NA non-coding upstream 396360 17848158 ~ 17851113 (-)
G62951 cnot1 non-coding upstream 516435 17968233 ~ 17969691 (-)
G62981 NA non-coding upstream 685682 18137480 ~ 18138298 (-)
G63015 NA non-coding upstream 732210 18184008 ~ 18186050 (-)
G63057 NA non-coding upstream 906027 18357825 ~ 18358910 (-)
AMCG00020346 nup93,LOC103368977 other downstream 625718 16794996 ~ 16817767 (-)
G62618 NA other downstream 650318 16792866 ~ 16793167 (-)
AMCG00020336 NA other downstream 818515 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 1167912 16272451 ~ 16275573 (-)
G62415 NA other downstream 1188366 16252788 ~ 16255119 (-)
G62853 necab2 other upstream 158866 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 535383 17987181 ~ 18015862 (-)
G62961 NA other upstream 554370 18006168 ~ 18039960 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 2836772 20288570 ~ 20299843 (-)
G63464 NA other upstream 3860404 21312202 ~ 21312605 (-)

Expression


Co-expression Network