AMCG00020376 (thap11)


Basic Information

Item Value
gene id AMCG00020376
gene name thap11
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17452928 ~ 17453764 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020376
ATGCCCGGGTTCACCTGCTGCGTCCCTGGCTGCTACAACAACTCGCACCGGGACCGGGAGCTGAGATTCTACACCTTTCCCAAGGATCCCGTACAGAGAGAGATTTGGCTGAAGAACATCTCCCGGGCCGGGGTGAGCGGCTGCTTCAGCACCTTCCAGCCCACCACCGGCCACCGGGTCTGCAGCATCCACTTCCCCGGCGGCAGGAAGACGTACAGCATTCGGGTGCCCACCCTGTTCCCGCTGCGGGGCGTCAACGAGAGGAAGACCCGGCGAGGGAGGAACAAGAAAGTCTCCGCTGTTTACCCCTCAGCCGTCGCTCCTGTTGCTGCCACCGTCGATGCGACTACCGTGTGCCCCCCGGCCGGAGTGGCCCCGGAGGACGCGGGCGGCAACGCAGAAGACGCCGGGAACGGGGCGCGGAAAGAGCCCGGCGCCCTGGACGTGAAGCCCATCGACCTGACCGTGCAGCCCGACGGCTCTTGCTTGCCCATCGCCGCGTCCGGCTCCCCAGCGCTCCCCGGACCCGAGCAGCACACGGCAGGGGCCACCAGCTCGGCCACCGTCCCGCAGCCGCTGCCGCTGTCCAAGATCGACCTCGTCTCCCTCGGCGCGTCCGACCACTCGTACTCGCTCTCCTCCGGCACCACGTCGGCGGAGCTGCTGAAGAAGCTCAACGAGCAGAGGGACATCATCGCGCTGATGGAGGTCAAGATGAAGGAGATGAAGTCCACCATCCGGCAGCTGAAAGTGACCGAGGCGAAGCTGAGAGAAGAagtcagagacagagacaggatgCTGTCCAGCTCGGTGATACGCAAGAAGCACGGCATGTAG

Function

symbol description
thap11 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and zinc ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Orthologous to human THAP11 (THAP domain containing 11).

NR:

description
PREDICTED: THAP domain-containing protein 11

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23211 THAP11; THAP domain-containing protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020376 True 837 mRNA 0.65 1 17452928 17453764
Loading

Neighbor

gene id symbol gene type direction distance location
AMCG00020377 NA coding upstream 67382 17385156 ~ 17385546 (+)
AMCG00020368 pard6a,LOC108250860 coding upstream 87314 17364458 ~ 17365614 (+)
AMCG00020369 LOC107733556 coding upstream 111952 17339756 ~ 17340976 (+)
AMCG00020366 NA coding upstream 136010 17276550 ~ 17316918 (+)
AMCG00020364 NA coding upstream 181396 17261682 ~ 17271532 (+)
AMCG00020380 NA coding downstream 19133 17472897 ~ 17500277 (+)
AMCG00020379 NA coding downstream 64063 17517827 ~ 17520204 (+)
AMCG00020378 pskh1 coding downstream 84361 17538125 ~ 17549842 (+)
AMCG00020381 mbtps1,LOC107596929 coding downstream 105773 17559537 ~ 17584315 (+)
AMCG00020383 NA coding downstream 132373 17586137 ~ 17591308 (+)
G62681 nudt21 non-coding upstream 406778 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 417430 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 463349 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 659048 16793664 ~ 16793880 (+)
G62564 NA non-coding upstream 806667 16644938 ~ 16646261 (+)
G62909 NA non-coding downstream 500559 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 527269 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 534084 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 681229 18134993 ~ 18138267 (+)
G62989 NA non-coding downstream 743815 18197579 ~ 18200808 (+)
AMCG00020370 NA other upstream 10217 17433642 ~ 17442711 (+)
G62632 NA other upstream 637071 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 848270 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 2980383 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 3220660 14195784 ~ 14232268 (+)
AMCG00020371 nutf2 other downstream 5380 17459144 ~ 17471869 (+)
G62895 NA other downstream 474564 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 604794 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 614023 18067787 ~ 18072051 (+)
G63045 NA other downstream 878805 18332569 ~ 18334032 (+)

Expression

AMCG00020376(thap11) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

AMCG00020376(thap11) Expression in each Bioproject

Bar chart with 7 bars.
AMCG00020376(thap11) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2018057 LOC106562238 non-coding NC_048590.1 CM023244.2 28874080 ~ 28875769 (-)