AMCG00020378 (pskh1)


Basic Information

Item Value
gene id AMCG00020378
gene name pskh1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17538125 ~ 17549842 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020378
aaaaaaaagaaaaaaaaaaagaaaaaaggtgcaGATTTACGTTTTTGCAGCGGACAACAAGAGCCTCCAGTGCAGTCAGTTGTGCAATGCAGGACTGGGTTTCTCAGCTGGCCAGGCCTTACGTTACCGTTTTCCCAATAGGTTATTATTGTTAGGGTAGGAGAGACGGAAGGAGAAATACaacatataagaaaaaaaacagaaacaaaaaatggagAGGAGAGCTCCTAGGAGGGAGTTGGGGAGGTCGGAGTTAGCGGGCTGTGAAAGGACTCTTTGCACCTTGAATTACTCCAAATAACCGTACGATCATATAGAGAGGAAGattttgctttatttattttagttttctccgAAACCCAAAGCTGTATCGTCCAAACAAAGGTACCGGAAGATGGCAGGCAGATAAAGATGCCCGCTGGCACCAGGGGCAGGATCGTGACATGATGGGCTGTGGGACGAGTAAAGTACTTCCCGAGCCGCCCAATGACGTCCAGCTCGACCTGGTGAAGAAGGTGGAGCCCTACACAGGGCAGAACACGGACAAGTATAAGCACTTCATCACAGACGATGGCAGTGGGGCAAAGACAGGGGAGAAGATATGCTCCCCATCCCCAGCCCAGGCCGGACACAACCCCTACAGCCCGGCCGGGGATCTTCTCCATGGACACCAGGACACCAGCGACCCCCGGAGGAACAAGGTGGCCAAATACCGGGCCAAGTTCGACCCGCGAGTGACGGCCAAGTATGATATCAAGGCCCTGATTGGCCGCGGCAGCTTCAGCCGGGTGGTGCGCGTGGAACACAAGAGCACCAAGCAGCCCTATGCCATCAAGATGATCGAGACCAAGTACCGGGAGGGGCGGGAGGTGTGTGAATCGGAGCTGAATGTGCTGCGGCGCGTGCGGCACACCAACATCATCCAGCTGATCGAGGTCTTCGAGACGCAGGAGCGGGTCTACATGGTGATGGAGCTGGCCACCGGGGGCGAGCTCTTTGACCGCATCATCGCCAAGGGCTCTTTCACGGAGAGGGATGCCACTCGGGTGCTGCAGATGGTGCTGGATGGGGTGAAGTACCTGCACACACTGGGCATCACCCACCGTGACCTGAAGCCCGAGAACCTCTTGTACTACCACCCCGGTACAGACTCCAAGATCATGATCACAGATTTTGGCCTGGCCAGCACCCGCAAGAAAGGGGACGAGTGCCTAATGAAAACGACTTGCGGCACACCTGAGTACATTGCACCAGAGATCCTGGTGCGGAAGCCCTACTCCAACGCGGTGGACATGTGGGCCCTGGGCGTGATCTCATACATCCTCCTCAGTGGCACCATGCCCTTTGAAGACGACAACAGGACGAGGTTGTACAGGCAAATACTGAAGGGAAAATACAGTTACTCAGGGGAGAGTGACAATCTGTCAGTCCCACAGGACCAGGGCAGCAGTGCATTTGTACCTGTCACTCGAGAATCAGGCTCAGCGGAGATCTGCACAGAAGTGTGGAATTCGAAGAGTAAGCCCTGGCCTAGTGTTTCCAACCTGGCCAAAGACTTCATAGACCGTGTGCTGACGGTGGACCCCAGCGAGCGCATGACGGCGGGCCAGGCCCTGAAGCACCCCTGGGTGGTCAGCATGGCCGCCTCTTCCTCCATGAAGAACCTGCACCGCTCCATCTCCCAGAACCTCCTGAAGAGGGCATCCTCGCGCTGCCAGAGCACCAAGTCCGCCCAGTCCACACGCTCCAGCCGCTCTACCAAGTCCACCAAGTCTCGGCGCGTGCGGGAGAGGGAGCTGCGGGAGCTCAACCTGCGCTACCAGCAGCAGTACAATGGCTGAGGACAAGACTGGCCCAGGCCCACCTCCACTGCTGCTGTCCCGGCTCCCCCCACAAACACCCTCCaccctctgctctctctctctttctgttattctttccccattttgttttcatttttttttgtaactgtcttttatttatttattatgttctttTTCTTAAGGAAAATCTTGGTGGTTTTAAAGTTGAATGATCTGTTGAACAGAATTCTATAAAAGTGTTATGAAGGATTCTTTCCAAAGCCAAAAAAACAATCGTAATGACAACGGTTTCCACAAAGAATGCTGCTGTAGAAGTTGTGTAAAAGCCTCTATGAAAAGGCATTGTGAGTAAAGGAGCAGGCATGCCCCTGCTGTGAACCATGAGTGGAAGCATTAAgtctacaaaaaaacaaaggaagtcTGAggccttacacacacacaccttgggGCACAATGTCACTGTGTTAGAAATCAGTTTAACAATTACAgttgttacattttttcagcAAGTGATTTTCATATTAGAAATCTTTGCTAATGACTTTATCTGATCATATGAAGGTTTTAATTTCAAGGAGTGCTACCACTTAATTAAGCAAGCTGCCACAGAAGTATCTAGGTCTCtaggtaattaaataatatttgacaACTGAGCGCTGAAATGGCAAGACCATCTATGCAAATGTAGACGATCCCCTCAGACTTCTAACAGTGTTTATCTCCACCTTTAGTAACATGCTTATAGCTGTCTACCAATGGATTGCTAATCTTAGTCTgaggttattttatttgtattcctttccAATATTCAGTACAGTACTCTTGTCTTTGCACACTGTAAACACTCACTGGATGATAAACACCTCTAGGAATAGTATGATCTTTTTTTAGTGCCAGAACAAGCAGGCAGGGGTTAATTGACTGCAGATCTCTGGCCAATGTTtgccatgtatttatttaaaatgtttatttgttacCCACAGTAACTTTATTGAACTGTCAATGCGATTTGACATGAGTCCAATGCTTTAGATAGCCACAAGGCACAAGTTCAGAAAGATATTAACATGATCCTGTGAGCAATTGCAAAACCAGTATGCATGACCATGGCATACTGAGagtgatgttttaaatgcactccctgtgtgtgtgttttttaataggGAGTTTTGGCTAGCCCTGATGCacattatatctatattttttgtctcttcttcaagttatttaatttttttaaattccagccTCAAAGGACAGTAACATTTCCCTGGACATGTTGAAAGGAAAGTAGGCAGATTTACTTGGAAGCAGAGTGTTTGTAAACATGACTCGTGTACCcaggaagaaaggaaggaagcTTGACTGAGCTGACTGTGCCTGTTCATCCCAGCTCTAAGTTTTTCTTCCCTTCATGCTTTGCTTTGTAATCGACACTGCAGAAGCTACTGTGCCAAATACTCAAATATGTCAAGTGTCTGATGTGTGGTTATCAAACTAAGAGGTGTTTATCAAGTGTCATTCCCTCTTCTCAGCCCCTACTATATATTGCATACTGAGCCTCAGTTCGCTTGAACCGTCTGGCTGCATCAGATTCCAATGTTCGCGATGTGGAACCTAGTCTCTCGGCCTTCGCACTGGAGCACGACTGACTTTCATCTGACAGTCAAGAGAAACGTTTGTTACAAACAGGAATAAAGTCACATTTACTAATTTGCAAAAAGCCAATCACTGCCAGTGCGTGAGGcagggactttttttttttttttcttccccccctgGTAAATCTTCTACAGTTAATTGAAGTTCACAGACTACTGTTAAGCTGCCACATATCTtgcccaatatatatatatatatatttttttttgtctggatGCTGTCTTCTGTATGATTTACCACTTCAACAAAGCACTTAAAGTGAAGTCCTATTTTTGTGGTTTCCTCTCTATATAAGTATCTAACGGTGTTTAGAAggatactttttgttttttgtaaaagtgtgtgggggggggggaaccaaacaaacatttcaatttcaaaatttaattttagaaGCCAGTATTACTTTGCCAAGAGGGAAACATGATGTAAAACATtctaaaatatacatgtattttgacAGGACAGCTGGATAAAACGACTGAACTGTTAACCTGCAGTGGTATCTTCATGACAGTGCCAGCTATACATACAGGGAAATcaaaaatgctgtttatttctATGGGCATTCATGGAGAATTTTAGTCATGCCAACAAAATCTGATCTTAACGATGTCTCCACTCCATTACCAGCATGGGGAGCTTACACTGTGTTTCTGTAGTGTCACTTTCACCAGCATAGATGACCTTACCCGCTTTTAGAAAAGGATTATATAATTATGTCATTATTAGATCATTTTAAGGCCTCTAAACACAAAGTGTAATTCACAtccttgttgtgttcctagacTCTCAGCCCAGGGTGTTCTGGGTAGTTTTTCTTGCCAAACTAGTTTATTACATAAGCTAGTTAATTGAATAAGCTGTGAGTTGCTCACTGTATTGCTCACAAACCTAGAAGACACTGAAAAGGTCTGTCAAAGGTGTTTTGTGATTTACAGTGCTAGTTGGGAAGACGTCTGTTGGTTGACAGGGGTGGGAGGTGCAGAACATACCTACATTGAGCGATTATGGCTGGTATGTTAGGGCACAAGTGCAGTTAGCCATTGCTTGTTTCCATGGTTTTTGACATCTGATCAGAAGAGTGCATTTCAGTGTAGTTTCTACAGAGAGAGTTTTCCACAACACTATGGATCTGGTTTTAGAAGGAGATATGAAGGACCTACAACACTGTTGCCATTGAGTATATTATTCCTTATGTTTTTTAAGGAACATAGtttggatttttacattttgtcttttatttttaggttgGGGGGGGGCTTTACAATGATATAGTCAACAAGACCAGCTTTACCAAACTTTATTTGTTTCCTGGGGGGTGGGGTTCTTGTGatctttaatgttatttaaccatttacagtttttactttttatttttttttcaacgAGATGTGAATTTTGAAATACTGGAATTGCTGAAGAGCTGACGTGAATCATTGTGGTCCATGCTGTCTTCGTCTCAGTTGCTGAATGGGTTAACTCGGATACCAGTGTTTCACTTTGAGAAGGAGACCGCATGCTTTTCGTTGCCCTGGACCTGTAACTGCACGATGACTGCAGTCGTCTTTTGCGTTTGACCCTAGCACTTTTAAAGTGACCTGTGGATAAAAGTGGATGTCTGGgtcccttttttaaaataaatagtacttgtattttgtttataacaCTTTTGATAGATTCTTGACTATCACATTGCCTTATCTGTTGTGACCAAAAATATTTCAGTCAAGGTATTTGAGCATCAGAAGACACTGATTGTCTTAACACTGATGCCTTCTTTACTATGTTAATTTTAGTTGTCAGACTTGTAATTAAAATCAAGCACTAATTAAAGAATGAGAAGTCACCCACAGTGTTGCCTATATTTAAACTGTGGTTACTTATAGCTCTTCAATGGCAACATAATAAATTACACATGGTCAAGATGTTGTAAATTAATTAGCAGATTGAGCCTGAAGCCATTTATAATAGCTTGGTTTACTTCACAGTTACACACTTTGCAGGACTGTGTAATGAACAGATACTTTTTTATAGTAATTTgtaggaataaataaaaatgtttttgtatttactgtttatgTTTTGATATTTCATATACATATGGTTCACCTGAAACTCATTCTCAAGGTGAGTTTGTGCCCTTTACAGTACAAAGCGAAAAACAGCACTGTCTCCTTAtcagaagttattttttttaaatatatgtgtttgcatcagatgtatttttaaatgtgtttgtgtgtgtttataatgaaGGTTaatgaatagatttttttatttactttttttaatgatgaacTGGTTCAGTCTTAGTTTTGTGTATAATGTGCctacaaaataaaccatataaCTTTT

Function

symbol description
pskh1 Predicted to enable ATP binding activity; protein serine kinase activity; and protein threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human PSKH1 (protein serine kinase H1).

NR:

description
PREDICTED: serine/threonine-protein kinase H1

GO: NA

KEGG:

id description
K08808 PSKH; protein serine kinase H

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020378 True 5840 mRNA 0.43 4 17538125 17549842

Neighbor

gene id symbol gene type direction distance location
AMCG00020379 NA coding upstream 17921 17517827 ~ 17520204 (+)
AMCG00020380 NA coding upstream 37848 17472897 ~ 17500277 (+)
AMCG00020376 thap11 coding upstream 84361 17452928 ~ 17453764 (+)
AMCG00020377 NA coding upstream 152579 17385156 ~ 17385546 (+)
AMCG00020368 pard6a,LOC108250860 coding upstream 172511 17364458 ~ 17365614 (+)
AMCG00020381 mbtps1,LOC107596929 coding downstream 9695 17559537 ~ 17584315 (+)
AMCG00020383 NA coding downstream 36295 17586137 ~ 17591308 (+)
AMCG00020384 NA coding downstream 47291 17597133 ~ 17610083 (+)
AMCG00020386 NA coding downstream 274975 17824817 ~ 17831066 (+)
AMCG00020388 NA coding downstream 287541 17837383 ~ 17848350 (+)
G62781 NA non-coding upstream 34862 17404385 ~ 17503263 (+)
G62681 nudt21 non-coding upstream 491975 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 502627 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 548546 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 744245 16793664 ~ 16793880 (+)
G62909 NA non-coding downstream 404481 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 431191 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 438006 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 585151 18134993 ~ 18138267 (+)
G62989 NA non-coding downstream 647737 18197579 ~ 18200808 (+)
AMCG00020371 nutf2 other upstream 66256 17459144 ~ 17471869 (+)
AMCG00020370 NA other upstream 95414 17433642 ~ 17442711 (+)
G62632 NA other upstream 722268 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 933467 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 3065580 14467800 ~ 14472545 (+)
G62895 NA other downstream 378486 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 508716 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 517945 18067787 ~ 18072051 (+)
G63045 NA other downstream 782727 18332569 ~ 18334032 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 2047361 19597203 ~ 19602324 (+)

Expression


Co-expression Network