Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00020379 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030127.1 |
| NCBI id | CM030127.1 |
| chromosome length | 42978078 |
| location | 17517827 ~ 17520204 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | description |
|---|---|
| ko04744 | Phototransduction |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00020379 | True | 438 | mRNA | 0.62 | 3 | 17517827 | 17520204 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00020380 | NA | coding | upstream | 17550 | 17472897 ~ 17500277 (+) |
| AMCG00020376 | thap11 | coding | upstream | 64063 | 17452928 ~ 17453764 (+) |
| AMCG00020377 | NA | coding | upstream | 132281 | 17385156 ~ 17385546 (+) |
| AMCG00020368 | pard6a,LOC108250860 | coding | upstream | 152213 | 17364458 ~ 17365614 (+) |
| AMCG00020369 | LOC107733556 | coding | upstream | 176851 | 17339756 ~ 17340976 (+) |
| AMCG00020378 | pskh1 | coding | downstream | 17921 | 17538125 ~ 17549842 (+) |
| AMCG00020381 | mbtps1,LOC107596929 | coding | downstream | 39333 | 17559537 ~ 17584315 (+) |
| AMCG00020383 | NA | coding | downstream | 65933 | 17586137 ~ 17591308 (+) |
| AMCG00020384 | NA | coding | downstream | 76929 | 17597133 ~ 17610083 (+) |
| AMCG00020386 | NA | coding | downstream | 304613 | 17824817 ~ 17831066 (+) |
| G62781 | NA | non-coding | upstream | 14564 | 17404385 ~ 17503263 (+) |
| G62681 | nudt21 | non-coding | upstream | 471677 | 17030193 ~ 17046150 (+) |
| G62680 | NA | non-coding | upstream | 482329 | 17031817 ~ 17035498 (+) |
| G62654 | NA | non-coding | upstream | 528248 | 16987319 ~ 16989579 (+) |
| G62617 | NA | non-coding | upstream | 723947 | 16793664 ~ 16793880 (+) |
| G62909 | NA | non-coding | downstream | 434119 | 17954323 ~ 17955274 (+) |
| G62912 | NA | non-coding | downstream | 460829 | 17981033 ~ 17983521 (+) |
| G62916 | NA | non-coding | downstream | 467644 | 17987848 ~ 18032139 (+) |
| G62975 | NA | non-coding | downstream | 614789 | 18134993 ~ 18138267 (+) |
| G62989 | NA | non-coding | downstream | 677375 | 18197579 ~ 18200808 (+) |
| AMCG00020371 | nutf2 | other | upstream | 45958 | 17459144 ~ 17471869 (+) |
| AMCG00020370 | NA | other | upstream | 75116 | 17433642 ~ 17442711 (+) |
| G62632 | NA | other | upstream | 701970 | 16814374 ~ 16815857 (+) |
| AMCG00020331 | st3gal2,LOC107686287,LOC106573711,LOC107672232 | other | upstream | 913169 | 16582886 ~ 16604658 (+) |
| AMCG00020281 | slc12a4 | other | upstream | 3045282 | 14467800 ~ 14472545 (+) |
| G62895 | NA | other | downstream | 408124 | 17928328 ~ 17928904 (+) |
| AMCG00020408 | NA | other | downstream | 538354 | 18058558 ~ 18065789 (+) |
| AMCG00020407 | NA | other | downstream | 547583 | 18067787 ~ 18072051 (+) |
| G63045 | NA | other | downstream | 812365 | 18332569 ~ 18334032 (+) |
| AMCG00020439 | LOC107696663,LOC107556242,LOC107746488,LOC107726063 | other | downstream | 2076999 | 19597203 ~ 19602324 (+) |
