AMCG00020381 (mbtps1,LOC107596929)


Basic Information

Item Value
gene id AMCG00020381
gene name mbtps1,LOC107596929
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17559537 ~ 17584315 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020381
GAGTTCAGTAGGATGCTATGTTGATAAACCGTCAGGGGGCTTACGAGACGGTGAAGTTTGGTGTGTGAAGTGTACATTTTGGACGGTACACAGCGAAAATAATCGGATATAGTGTTTGTGGCAGACAGCCCCTCCAGGAGAAGAGGCCATGATTTAAGGAAGTGCAGGAGCAGAGCGGCCAGTCCGTGAGTcatccgtctctctctccagggtgGAAATGGAAACCTTGATGCACACAGTGCTGCAGGACTGAACAACGCACACTGGGCCCTCCAAGATGGAGAAGAAACGCAGAAAGAAATGAGATAAACTGGGCCTTTTAATCCAGGCTTCCTTGGAATGGACCATGACACTTAAACTTTATCTGTTCCAATCTGACTTTCTTATTCATCGTTGTTTTCGGGAATCGTGCTTCAATGTGCTGAAAAACTCCCCTATGGCAGGGACGAACTGAGACCTGCTCTGGGCGATTTGGGCAACAAATACAGTATTGGATTATTGGGAGCTGCATACAGACTGCAGAGACCCATGAACATGGCTACTGTCTGGCTGTCCTTGTTGATGGTCCTGTTTTGTGGCAGGAAGCACCTGGGGACAGAGCCCGGAGGTGCTGTGACATCTCAACCGAGCTTTCTGTGCTCCAACTGCTCCCACCTCACTCTCAAAGTGGAGTTCTCCTCTACTGTGGTAGAAGACGAGTACATCGTAGCCTTCAATGGATACTTCACTGCCAAAGCCAGGAGTCAGTTCATTTCAAGCGCTCTGCGGGGCTCAGAGGAGGTGGGCTGGCGCATCATGCCACGGGACAACCCTGCCAGTGACTTCCCCAGCGACTTTGAGCTTCTCCAGATCAGCCAGGGCCCCCGGGAGGGCCTGCTCACCCTGCAGGACCACCCCTACATCAAGAGGGTCACTCAACAGCGCAAGGTGTTTCGCACCCTCAAGTTCACGGACTCGGGGGACCCAGCGGCACCCTGTAACGACACACGCTGGACCCCGAAGTGGCAGTCCTCACGACCGCTGCGCCGCACCAGCCTGTCCCTGAGCGCCGGCTTCTGGCACGCCACAGGCCGCCACTCCAGCCGCCGCCTGCTGAGAGCTATCCCTCGGCATGTGGCACAGATCCTACAGGCCGACGTGCTCTGGCAGATCGGCCACACGGGCGCTGGTGTGAAGGTAGCAGTATTTGACACTGGACTCAATGAGAAACACCCACACTTCAAAAACGTGAAGGAGAGAACCAACTGGACCAATGAGAAAACCCTGGATGATGGCCTGGGTCACGGCACGTTTGTGGCAGGGGTCATCGCCAGCATGAGGGAGTGCCAGGGCTTCGCCCCCGACTCAGAGCTGCACATCTTCAGAGTCTTTACCAACAACCAGGTCTCTTACACCTCTTGGTTCCTGGATGCCTTTAACTATGCCATTCTGAAGAAGATTGACGTTCTTAACCTCAGCATTGGGGGACCGGACTTCATGGACCATCCTTTTGTTGATAAGGTCTGGGAGCTGACTGCTAATAAGGTGATCATGGTCTCGGCTATTGGAAATGATGGGCCTCTTTATGGCACTCTGAACAATCCTGCCGACCAGATGGACGTGATCGGTGTGGGTGGCATCGACTTTGAAGACAACATCGCCAAGTTCTCCTCCAGGGGCATGACCACATGGGAGCTTCCAGGGGGTTACGGCAGGGTGAAGCCCGATATCGTCACATATGGCTCTAGTGTGCGCGGCTCTGGCATGAAGGAGGGCTGCCGCTCGCTCTCGGGCACCAGTGTGGCTTCCCCGGTGGTGGCAGGAGCCGTCACTCTGCTAGTCAGCACGGTACAGAACCGGGAGCTGGTGAATCCTGCCAGCATGAAGCAGGCTCTCATTGCCTCAGCACGCCGACTGCCTGGGGTCAACATGTTCGAGCAGGGCCATGGCAAGCTGGACCTCCTGAAGGCCTATCAGGTTCTGAACAGCTACCGGCCCCAGGCCAGTCTGAGTCCGAGCTACATTGACCTGACCGAGTGCCCGTACATGTGGCCCTATTGCTCCCAGCCGATCTACTATGGGGGAATGCCAACCATCGTTAATGTCACCATTCTGAATGGCATGGGCGTGACGGGCAGGATTGTTGACAAGCCTGTCTGGCATCCCTATCTGACTCAGAGCGGAGACCACATCGACGTGGCAATATCCTACTCCCCTGTGCTGTGGCCCTGGGCTGGCTATCTGGCCATCTCTATCTCTGTCGCCAAGAAAGCAGCATCATGGGAAGGGATTGCTCAGGGCCATGTGATGATCACTGTGGCGTCACCAGCGGAGAATGATTCAAAGGCTAGCGGAGAGCTGACCTCCACTGTGAAGCTGCCAGTGAAGGTGAAGATCATTCCCACTCCTCCGCGCAGCAAGAGGGTGCTGTGGGACCAGTACCACAACCTGCGCTACCCACCGGGCTACTTCCCCCGAGACAACCTGCGCATGAAGAACGACCCCCTGGACTGgaATGGAGACCACATCCATACCAACTTCAGAGACATGTACCAGCACTTGAGGAGTATGGGCTACTTTGTGGAGGTTCTGGGGGCTCCTATCACTTGCTTCGACGCCAGCCAGTACGGGACGCTGCTGATGGTGGACAGCGAGGAAGAGTACTTCCCCGAGGAGATCGGCAAGCTGCGGCGAGACATCGACAATGGGCTCTCGCTCATCGTCTTCAGCGACTGGTACAACACCTCCGTCATGAGGAAGGTCAAGTTCTACGACGAGAACACCAGGCAGTGGTGGATGCCGGACACTGGGGGGGCCAACATCCCTGCCCTGAATGACCTGATCTCCGTGTGGGGGATGGCCTTCAGTGATGGGCTGTACGAGGGAGACTTCACCATGGCTGAGCATGACAtgtactATGCCTCTGGATGTAGCATTGCCAAATTCCCTGAGGACGGGATTGTTATTGCCCATACTCTGAAGGACCAAGGCCTGGAAGTGCTGAAGCAGGAGACGGCAGTAGTGGATAATGTGCCTATCTTGGGCCTGTACCAAACGCCCTCGGACGGTGGGGGGCGGATAGCTCTCTACGGAGATTCCAACTGCATAGATGACAGCCACCGACAGAAAGACTGCTTCTGGTTGCTGGACTCCCTGCTGCAGTTCACCTCCTATGGCACGACCTCCCCGAGCTTCAGCCACTCGAAGAACAGACTGCCCTCCCCCACGGGCAAGGACCGCCCGCTGCCCGAGAGACTGGAGGACCCAAAGCCCCGACCGCTCCCTGCCTGCCCCCACCTGTCCTGGGCCAAACCCCAGCCTGTCAACGAGACTGCACCCAGTAACCTTTGGAAGCATCAGAAGCTCCTGTCAATAGAAACAGACAAGGTGGCCCTGCCCATGCTCGGGGCCAACCGTCCCCAGGTGCGGCCCCTGTCACCGGGGGAGAGTGGAGCCTGGGACATCCCGGGGGGAATAATGCCCGGGCGCTATAACCAGGACGTGGGCCAAACCATCCCCGTCTTCGCCTTCCTGGGGGCCATGGTGGTGCTGGCATTCTTTGTGGTCCAGATCACCAAGACCAAGAGCAAGCCAAAGAGGAGAAAACCCCGGGTAAAGAGGCCCCAGTTCCTGCAGCCGCCACACACAGCAAAGACGCCCACCGTGTGAAGGAGCCCACCGCCGTGCTCCACAGAGCCGCCTCACTGTGGTGGGGTGTGTAAACGGACTCTCCTCTTCCTTGGACATCTGTAATGAACCTGCAGAGGGAGCCGGGGGCTGAAGGTTCTCCAAAGTTCTCCAGAAAGTGGTTTCaggaacttttatttttatttttgtttctttcccacATTTCTCAGCATTACGAACTCGTTTAATTCAGAGCCTTTCTCTCTACTGACCAAATGGAGGAAGTGTGCtgtccctttttcttttttttgttttgttttgtatttattttactttttttttttttttaatccaggcTTTCCTACAGGGACATTTTGTGAATGAAAAGGGCTTGACTGACTGAGTGGGGTTCTGTGCTGTAGTGATGCACCTTTAGGAATCATTGCAAGGAAagccttttttctctctctctctctctctctccctttacTTCTTTTTTTATGTCCAGATGACAAGCTTTGCtctcatctgtttttctttttttgtttttttttataaaatggcATCTCCcatgacattttgtaaatattcatCATGATTTCACCATTATCGGTGGAGTAGGTTTGGAAGCTTTTCAAATATATCTTATCAATtatgaagctgaaaa

Function

symbol description
mbtps1 Predicted to enable serine-type endopeptidase activity. Acts upstream of or within cartilage development; lipid metabolic process; and liver development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including axial chorda mesoderm; axis; margin; pleuroperitoneal region; and tail bud. Human ortholog(s) of this gene implicated in spondyloepiphyseal dysplasia Kondo-Fu type. Orthologous to human MBTPS1 (membrane bound transcription factor peptidase, site 1).

NR:

description
PREDICTED: membrane-bound transcription factor site-1 protease isoform X2

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0051216 cartilage development biological_process
GO:0006508 proteolysis biological_process
GO:0001889 liver development biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K08653 MBTPS1; membrane-bound transcription factor site-1 protease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020381 True 4273 mRNA 0.54 23 17559537 17584315

Neighbor

gene id symbol gene type direction distance location
AMCG00020378 pskh1 coding upstream 9695 17538125 ~ 17549842 (+)
AMCG00020379 NA coding upstream 39333 17517827 ~ 17520204 (+)
AMCG00020380 NA coding upstream 59260 17472897 ~ 17500277 (+)
AMCG00020376 thap11 coding upstream 105773 17452928 ~ 17453764 (+)
AMCG00020377 NA coding upstream 173991 17385156 ~ 17385546 (+)
AMCG00020383 NA coding downstream 1822 17586137 ~ 17591308 (+)
AMCG00020384 NA coding downstream 12818 17597133 ~ 17610083 (+)
AMCG00020386 NA coding downstream 240502 17824817 ~ 17831066 (+)
AMCG00020388 NA coding downstream 253068 17837383 ~ 17848350 (+)
AMCG00020387 calb2,LOC106573754,LOC105904495,LOC106560817 coding downstream 288508 17872823 ~ 17888787 (+)
G62781 NA non-coding upstream 56274 17404385 ~ 17503263 (+)
G62681 nudt21 non-coding upstream 513387 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 524039 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 569958 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 765657 16793664 ~ 16793880 (+)
G62909 NA non-coding downstream 370008 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 396718 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 403533 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 550678 18134993 ~ 18138267 (+)
G62989 NA non-coding downstream 613264 18197579 ~ 18200808 (+)
AMCG00020371 nutf2 other upstream 87668 17459144 ~ 17471869 (+)
AMCG00020370 NA other upstream 116826 17433642 ~ 17442711 (+)
G62632 NA other upstream 743680 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 954879 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 3086992 14467800 ~ 14472545 (+)
G62895 NA other downstream 344013 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 474243 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 483472 18067787 ~ 18072051 (+)
G63045 NA other downstream 748254 18332569 ~ 18334032 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 2012888 19597203 ~ 19602324 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013409 mbtps1 coding NC_007129.7 CM002902.2 21645309 ~ 21685055 (-)
grasscarp (Ctenopharyngodon idella) CI01000013_03241607_03258684 MBTPS1 coding CI01000013 null 3241607 ~ 3259203 (+)