AMCG00020383


Basic Information

Item Value
gene id AMCG00020383
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17586137 ~ 17591308 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020383
CTACTGACTCACACCCACCTCCAGCACTGGGGCTAAGTCTAACGACTTTACTGCTATAGAGTGTCAAATTGTAGACGCCACCTGTGTCTTCAGTGTTTTGTCCAGGTTTTTGGAAAGGAAGAGTCCAGCTCTCGACACAGCCATGGAACCCATGCCCCAGAGCTCTCTAGGAGGCAGCCCCCAGCAGCCCCTCCCAGCAGTCATCATCGGAAATGGTCCCTCTGGTATCTGCCTGTCTTACTTCCTGTCTGGTCACCGGCCCTATGTGAAGGAATCAGCTGCCCATCCCAACCCCATTCTTCACAGGAAGCTGCAAGACATTGTAGGACAGTCCCTACTGGAGCAGTTCCTGTGTGAGGGCCTGGAGGGGCGGTCCCCTAGCCCGCTGGCTCTGCTCTTCGACACACTGGTGCGGCCTGATGGAGACCTGGGGGGTTCGGCCGAGTCGCAGCTGACCTGGCGGAGGGAGGCGGGCCACTGCGTCCCTCATCTGGTACTGGGCAAGGGCCCCCCAGGGGGAGCATGGCATTCTATGGAGGGCTCCATGTTCACGCTCAGCCTGGGAGACTGGATGGAGCTGCCCAGCATGCGGTTCAGAGACTGGATGAGGCGCAGAGGAAGaCACCTAAGGAATGACAGAGCCACCACCAGAGACATAGCCCAATACTACCAGCACTATGTGAAGGAGTTCTCCCTGCAGGAGCACTTTGTCCTGGGCTCTGTGGTCACCTCAGTACGGCCTCTGCAGGGACATTCAGTGGCACTGGACCCTGCAGAGGAGATGTGTGGACAGCCTGGTGGGGGGGCAGATGCCCCACCAGAGATGTATGAGATCCGGGGCTTCCATGAGGTGGAAAGCGGGAATGCTAGCCCTTTCTGTCTGTATGCCCAGAATGTGGTGCTGGCCACGGGGAGTTACGACAGCCCATCCCGTTTGGGGGTGGAGGGTGAGGATCTCCCACATGTGTTCCATACCATCAGGGACCTGGAGCGCGCCCTGGAGATGCAGCAGCTGGACCCAGACTCAGACCCAGTCCTGATTGTGGGCGCTGGTCTCACAGCCGCCGACGCAGTCCTCCTGGCCAGACACAGCAACGTCCCGGTGCTGCATGCCTTCCGCCGTGCGGTCACCGACTCTGGCATGGTCTTCAGCCAGCTGCCACAGCTCATGTTTCCTGAGTACCACAAGGTCCACAGCATGATGGCTGAGCAGAGCCTGTGCTCCTGTGGGCCCTACCAAGGGTACACCAGCCTGCCCCGGCACTGCCTGCTGCGGCTCTCCCCAGACAGGAAGTGCCTGCTGGAGGACGCCGGTGGGAAAAGAACCGTCTTCAACATCTCCATGGCCTTCATCCTTATTGGCTCCAACCCCAATCTGTCCTTCCTGCCTGACCATGGCAGGCCGCTGGCCCTGGACCAGCAGCAGCCGATCAGCTCAAAGCGGAACCCCCTGGACACTGAACTCTTCACATATGAGTGCGTGAGGCAGCCCGGCCTGTACGCCCTGGGGCCCCTGGCTGGAGACAACTTTGTCCGTTTCCTCCAGGGCGGAGCCCTAGGGGTGGCTGCCTCCTTGCTAAAGAAAATGGACTCCACTGAAATGGCATGAAAATGTActgatatataaaatatatagtgcactttgtttttaaaatctttttcagatttttaaagTCTTAAGAAGGCTGCATCAGCTTTATCAGCATTGGGGCAGGAAACACTAAGTGTTTGTCGTCTCCAGCTTAATTCcgtattattttgatgttgttttctttgttatttattctactctgtttatataataaaatatatttttcttctttaaagcaatattttttgTAGGTACTACTGTTAAGTTTTTATATCACcaagtgctttcatttttaagtcTTGAAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020383 True 1899 mRNA 0.55 6 17586137 17591308

Neighbor

gene id symbol gene type direction distance location
AMCG00020381 mbtps1,LOC107596929 coding upstream 1822 17559537 ~ 17584315 (+)
AMCG00020378 pskh1 coding upstream 36295 17538125 ~ 17549842 (+)
AMCG00020379 NA coding upstream 65933 17517827 ~ 17520204 (+)
AMCG00020380 NA coding upstream 85860 17472897 ~ 17500277 (+)
AMCG00020376 thap11 coding upstream 132373 17452928 ~ 17453764 (+)
AMCG00020384 NA coding downstream 5825 17597133 ~ 17610083 (+)
AMCG00020386 NA coding downstream 233509 17824817 ~ 17831066 (+)
AMCG00020388 NA coding downstream 246075 17837383 ~ 17848350 (+)
AMCG00020387 calb2,LOC106573754,LOC105904495,LOC106560817 coding downstream 281515 17872823 ~ 17888787 (+)
AMCG00020399 NA coding downstream 314289 17905597 ~ 17912140 (+)
G62781 NA non-coding upstream 82874 17404385 ~ 17503263 (+)
G62681 nudt21 non-coding upstream 539987 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 550639 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 596558 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 792257 16793664 ~ 16793880 (+)
G62909 NA non-coding downstream 363015 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 389725 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 396540 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 543685 18134993 ~ 18138267 (+)
G62989 NA non-coding downstream 606271 18197579 ~ 18200808 (+)
AMCG00020371 nutf2 other upstream 114268 17459144 ~ 17471869 (+)
AMCG00020370 NA other upstream 143426 17433642 ~ 17442711 (+)
G62632 NA other upstream 770280 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 981479 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 3113592 14467800 ~ 14472545 (+)
G62895 NA other downstream 337020 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 467250 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 476479 18067787 ~ 18072051 (+)
G63045 NA other downstream 741261 18332569 ~ 18334032 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 2005895 19597203 ~ 19602324 (+)

Expression


Co-expression Network