AMCG00020384


Basic Information

Item Value
gene id AMCG00020384
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17597133 ~ 17610083 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020384
CAGATTTAGCACCCAGCCGTTTCACTTGCTAATCGAGTTAGGGGCTCTTTCGACCTTTTATGGCTTAATTAAACAAGGCGAGTTGATGGAAAGCCGGACTGACACTCCACTCCGCCGCAACGTGGATTGATCAAACTGGGGGCAGGACAGGAGGGATAAGAAgagcaagaagaagaaaaaacgtATTAGACTGGAGCTCAGTCTTTGCTCCCAGCCTCTACTACACAGACCGAGGTGAGCTGCGGCCGCCATGGAGGAACTGGCCCGTGAGAGCATCAGCCTGCTGGCCAAGCCGGACCCGGGCGGGCCGAGCCTGTCCTCCTTCGGCGCGGTGTTCATCATGCTGAAGTCCGCCCTGGGCGCTGGGCTGCTCAACTTCCCCTGGGCTTTCGAGAGGTCCGGGGGGATCAACACCGCTATTGGAGTGGAAATGGTGTCGCTGGTGTTCCTGATCAGTGGCCTGGTCATCCTTGGCTACGCCTCCTCCATCAGCTGCCAGGGCACCTACCAGGATGTGGTGCGGGAGCTGTGTGGCACAGCCATCGGCAAGCTCTGCGAGGTCTGCTTTGTCTTCAACCTTTTCATGATCTCCGTGGCCTTCCTGGTGGTGTGTGCGACTCCTGGCTCCGCCTCGGAAGCTGATGTGCCCTACCACTGGTACACGGACCAGCGCTTTGCCCTGTTCATCCTGTGTGTGGTGGTCATCCTGCCGCTCTCCATCCCCAAGGAGATCAGCTTCCAGAAGTACACCAGTATTTTAGGTACTTTGGCTGCGACATACTTGACAGTGGTGATCATCATTAAATACTACATGATGGAGACACATGTGGTCATCTACACGCCGACACACACCAGTGGGGTAGGTTCCTGGGCATCCATGTTCAGTGTCATCCCCACAATTTGTTTTGGCTTTCAGTGCCATGAGGCCTGCATTGCCATCTACAGCAGCATGGAAAACAAGAAGCTCTCACACTGGGTCGTCATCTCCGTTGTCTCCATGTTCTTCTGCTTGCTCATCTACTCCCTCACCGGAATTTTTGGCTATATGACCTTTGGGAGGGAAGTTGCAGCTGATATCCTGATGTCATATTCTGGGAATGATGTCGTTATCGTCATTGCCAGGCTGCTGTTTGGTGTGTCCATCATCACCATCTATCCCATCATCCTCCTGCTGGGGAGGTCAGTGATCCAGGACCTGTTTCTGCGGTACCGCCGGCGCCATATGGTCATCACCAAGTCCTATGAGAACCGGACGCGGGTCGTCCTGACTGTGCTGTGGATCAGTGTCACGCTGGTCATCGCCATGTTCGTGCCCGACATCAGCGAGGTCATCAGTGTCATTGGAGGCATCAGTGCCTTTTTTATCTTCATCTTTCCAGGTCTCTGCTTGATATTTGCCATGCAGTCTGAGCCTGTCTCTCCCAGGACCAGACTGGTCCTGACAGCATGGGGGGTCATCACTCTCCTCTGTGGAGCCTTCATCTTTGGCCAGAGCACAACGATCGCCATCATAGAACTCTTCAAAAAGTTCTGACCCTGCAGGACTGGAAACCTCTCTTTCAGGAGATGCAGCTCTTTGATTACAGGCATGATCGCAGAATGACAAGTGGGGGGGGAGCTGGCAGATGGTGGGGGGCTCGTGGAATGTCTAGCAGGGCGGTTTAGCTGTGGTTTAgatcacacatttgtttggccaggcggcACTGATGTCTTGGTCAGGCGGGCCTTATTATCAGACTTCATTTTCTACAGTATATGATggatgattgtgtgtgtgtgtgtattttgtttttatttatcaaggaggaaattattttaactgtttgtggtttttaaagtttttgttgttaCTGTGCAATTTGCTGTtcttgaagtaaaaaaataaaacttcaaa

Function

GO: NA

KEGG:

id description
K14994 SLC38A7_8; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 7/8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020384 True 1894 mRNA 0.52 11 17597133 17610083

Neighbor

gene id symbol gene type direction distance location
AMCG00020383 NA coding upstream 5825 17586137 ~ 17591308 (+)
AMCG00020381 mbtps1,LOC107596929 coding upstream 12818 17559537 ~ 17584315 (+)
AMCG00020378 pskh1 coding upstream 47291 17538125 ~ 17549842 (+)
AMCG00020379 NA coding upstream 76929 17517827 ~ 17520204 (+)
AMCG00020380 NA coding upstream 96856 17472897 ~ 17500277 (+)
AMCG00020386 NA coding downstream 214734 17824817 ~ 17831066 (+)
AMCG00020388 NA coding downstream 227300 17837383 ~ 17848350 (+)
AMCG00020387 calb2,LOC106573754,LOC105904495,LOC106560817 coding downstream 262740 17872823 ~ 17888787 (+)
AMCG00020399 NA coding downstream 295514 17905597 ~ 17912140 (+)
AMCG00020393 got2,got2a,LOC107694944,LOC107596935,LOC107738675,LOC107672286,LOC107726360,LOC107707915 coding downstream 307886 17917969 ~ 17926416 (+)
G62781 NA non-coding upstream 93870 17404385 ~ 17503263 (+)
G62681 nudt21 non-coding upstream 550983 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 561635 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 607554 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 803253 16793664 ~ 16793880 (+)
G62909 NA non-coding downstream 344240 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 370950 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 377765 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 524910 18134993 ~ 18138267 (+)
G62989 NA non-coding downstream 587496 18197579 ~ 18200808 (+)
AMCG00020371 nutf2 other upstream 125264 17459144 ~ 17471869 (+)
AMCG00020370 NA other upstream 154422 17433642 ~ 17442711 (+)
G62632 NA other upstream 781276 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 992475 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 3124588 14467800 ~ 14472545 (+)
G62895 NA other downstream 318245 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 448475 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 457704 18067787 ~ 18072051 (+)
G63045 NA other downstream 722486 18332569 ~ 18334032 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 1987120 19597203 ~ 19602324 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_03262979_03269729 SLC38A8A coding CI01000013 null 3262979 ~ 3269882 (+)