AMCG00020385 (necab2,LOC106936069)


Basic Information

Item Value
gene id AMCG00020385
gene name necab2,LOC106936069
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17659861 ~ 17673675 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020385
ATGCCAGCAGGGGATGCGGGGgatggactgactgactgtgggGCCACGCTGTGTGGTGGTGACGACGGGAAGCTCTCCCTTGATGAGTTCCAGGCGTTCTTCTCTGATGGGACACTCAATGAAGAGGAGCTGGAGAAGCTCTTCCACACCATCGACTCTGACAACACCAGTAATGTTGACACTAAGGAGCTCTGTGATTACTTTGCCTCTCACATGGGTGACTACGAGGACGTGCTGGCCTCCCTGGAGACTCTCAACCTGTCCATCCTGAAAGCCATGGACTACACCAAGCGGGACCTGCCATGTGGTCATCGATCTGCCATCATCATGGCCATAGTGCACAAGCTGATGGCTTAA

Function

symbol description
necab2 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of amyloid precursor protein biosynthetic process. Predicted to be active in cytoplasm. Is expressed in brain; central nervous system; cranial ganglion; and neurons. Orthologous to human NECAB2 (N-terminal EF-hand calcium binding protein 2).

NR:

description
PREDICTED: N-terminal EF-hand calcium-binding protein 2 isoform X2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020385 True 357 mRNA 0.55 5 17659861 17673675

Neighbor

gene id symbol gene type direction distance location
AMCG00020382 NA coding downstream 100766 17549751 ~ 17559095 (-)
AMCG00020373 NA coding downstream 208063 17443485 ~ 17451798 (-)
AMCG00020375 ranbp10,LOC107726299,LOC107694918,LOC107733562 coding downstream 227215 17425311 ~ 17432646 (-)
AMCG00020374 ranbp10,LOC106560827 coding downstream 244213 17408554 ~ 17415648 (-)
AMCG00020372 NA coding downstream 257753 17392557 ~ 17402108 (-)
AMCG00020392 NA coding upstream 34438 17708113 ~ 17761880 (-)
AMCG00020391 NA coding upstream 102309 17775984 ~ 17794499 (-)
AMCG00020390 NA coding upstream 131856 17805531 ~ 17810647 (-)
AMCG00020389 NA coding upstream 139640 17813315 ~ 17816888 (-)
AMCG00020397 NA coding upstream 252837 17926512 ~ 17930590 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding downstream 289415 17364823 ~ 17370446 (-)
G62715 NA non-coding downstream 484026 17120154 ~ 17175835 (-)
G62675 NA non-coding downstream 640309 17018790 ~ 17019552 (-)
G62660 NA non-coding downstream 669147 16990267 ~ 16990714 (-)
G62659 NA non-coding downstream 670577 16987319 ~ 16989284 (-)
G62880 NA non-coding upstream 174483 17848158 ~ 17851113 (-)
G62951 cnot1 non-coding upstream 294558 17968233 ~ 17969691 (-)
G62981 NA non-coding upstream 463805 18137480 ~ 18138298 (-)
G63015 NA non-coding upstream 510333 18184008 ~ 18186050 (-)
G63057 NA non-coding upstream 684150 18357825 ~ 18358910 (-)
G62853 necab2 other downstream 33672 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 842094 16794996 ~ 16817767 (-)
G62618 NA other downstream 866694 16792866 ~ 16793167 (-)
AMCG00020336 NA other downstream 1034891 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 1384288 16272451 ~ 16275573 (-)
AMCG00020403 NA other upstream 313506 17987181 ~ 18015862 (-)
G62961 NA other upstream 332493 18006168 ~ 18039960 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 2614895 20288570 ~ 20299843 (-)
G63464 NA other upstream 3638527 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 4457167 22130842 ~ 22132737 (-)

Expression


Co-expression Network