AMCG00020386


Basic Information

Item Value
gene id AMCG00020386
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17824817 ~ 17831066 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020386
CGTCACTGAAGTCCCTGATTGCGTGTGTCGGTACAGAAGGAAAGGCGGAAGCAAGGGCCGTGGATGTCCCGCAGgcAGAAGAAGAATTTAAGAAAAAGATGAGCAGGGGGCGGggagtaaagaaaaaaattgcTTTCGATAAAGCAACAGATCTTGACACTTTCAGCTCAGATATTCTCAATGAAATCAAGGAACTCTTCAGCAAAAGTGTTGCGTATCGTAAGCCTCCCACCAGGGAATGGCACATCCCAGACCCTAATGAAACTTTGAAGTATGACCCCCAGCAATACGGAAGTCTGCAGGCCCTAAAAGAGTCCCTGAACGAGGTTAAGAATCAGCTTAGTGACATGAACCTGGAAGTATGGCATCAGCACACGTCCTTCACCAACAAGGCCGGCAAGGTCATTTCCCACGTACGGACCTCTGTCAATGCTGAGATCTGCACACAGGCCTGGTGCAAATTCTATGAGATTCTGGGCACCTTTCCCTTAATCCCTGAGAAGTCCCTGCAGCATGGGGAGCTCAactctgtgcatctctgtgagGCCCCCGGGGCTTTCATAGCCAGTTTGAATCACTACCTCAAGTCCAACCCCCTTTACTGCGATTGGGCGTGGGCAGCAAATACCCTCAACCCTTACCATGAGGCCAATGACAATGGCATGATGATAATGGATGACCGGCTGATTGCCAGCACGCTGCCCTGGTGGTTCTTTGGCTCAGACGACACTGGAGACATCATGATCCAGAAGCACCTGCTGGAACTGCAGACCTTCACCCGCAACATGCGCTCCATTGACCTGGTGACGGCAGACGGCAGCTTTGACTGCCAGGGGAACCCCGATGAGCAGGAGGCTTTAGTGGCACCGCTGCACTACTGTGAGGCCGTCAGTGCCCTCATGCTGCTCAGCATAGGTGGATCCTTTGTCTTAAAGATGTTCACCTTGTATGAGTACTCTTCTGTCTGCCTGCTGTACCTCCTGAATTGTTGTTTCAGGACTGTGCATGTGTTTAAGCCTGCAACTAGCAAAGCTGGGAATTCTGAAGTGTATGTGGTTTGCTTGGAGTATTTTGCCAAAGGTGCAGTGAGGCCATTGCTCTCTAAACTGATTCGCAACTTTGGCCTGGACATCGCCAGCCGAGCCCTATTCCCCAAGCATTTAATTCCAGAGTCGTTTCTAAAGCAGCACGAAGAAATCTGCACATTCTTTCACAAACTCCAGGCTCACACGATCAACGAGAACCTCCAGCTGTTTCACTTGATGAGCAACGTGCAAAAGGAAAGGCTGAACAAACTACGGGACTGTGCTGCAGAGTTCTACCTCCACCGGTTTCAAGTGCAGTACCTCCACCGAAGCAAGTGGCTCTCCAAATACGCCCTCCGTGGCTGCCACCTGAATAGCAGGCTATTTGGGCACAGAAAGCAAGTGGGTTCTTTCAATGAAAGGAAAGAACTAGAGACCCTTGCGTGGAAGGAGAAAGTTGAAAAGGGGTTCTACAAAGCTTGGATCGAAGAAcatgttttgggggattttgGTAAAGGTTGTGTCCTACAAGGCCCAGCCTGTGACTGTGACATTGACACTTGGTACGTCTTGGCAGGCGCGGCTTTGCCAAAGGTCCGAAGCTCCCCTTTCTGTGATTTGGAATTGCTGAACCATCTCAATGAAGCCCTAGAACAGTCTGGAGTAACTAGGGAAGTAGAAGCAAACTTGGGTACCAGCAGAACTGCCTCAATTCTAACGGCTGACCGCCTGCTGTCTGAAATATCCAGTCTCATTCAGGGGCAGCCAACCCATGCCTCTGCAGTGCAGGGGGACCAGTGCCTTGTGGTGGGGAGCCCATCCTTTCTTGGAGATGTGCAGCCAACCACTCACCTGTGCATTGAGTTTGCTGACCCACCGCCATGCCCCCCTGTGGACTTGGTGACTTTGCACGATGGGGAGCCAAAATACCAGCGGGAGTTCCTCGACTGCGTCCTCTGCTCACTGCACAAGCTGAAGACTGGAGGTTCGTTCGTTCTGCCCATCTTGTCCTCCTTCACCCGCTTCATGGCAGGGCTGATCCTCACCCTCCATCAGTGTTTCCGCTTGGTTACCTTCAGGTGCCCGACCTCGTCTGATGCCCTGGGGACCATTGCTGTGCTCCTGTGCAGCGGATACCAGCTCCCCAGTGGCAGGCTGCTTGAATTCCTGCAGGAAATGCATGGTGTCATGTGTGGCACCCCCAAGGTGAAGACTCCTCAGCAAGTGCTCCAGTTTGTTCCCATGGAGGTTCTTCTGAAAGGGGCACTCCCAGAGTTTCTGTGGACCATGAACACTGCCATTGCCAAGCACAAACTCCACTTGCTGGTGCAGGCAGAGCAGGAGTCGTTGATGTTGACCGATTAAAATTTGGGACATACCAGATTTTCATTCCTCTTTCTGGGCAGCATTCTCTCCAGATGGCCAAATTCGATGGTTACATTGGCTGAACTGTACCCAGTTGTTACTTGatccttttcttttattcaagaaaatatttgtttttgttttttttccccccaagagACTGTGATGTATGAAAGTAATTTGCATCATTTTGTAGACGGAAGATgctattaattttatttgatgtgtatgtgtacacacacctatatattattattttgaatgtgtgtctatatatacatgcacacatctatatattattttgaatatatatttttatattcattaatATTCTTCAATGCCACAAGTGTAGCTATTTGTCAAAATGGAACAGTCAAGCTAGACTTTTTCCCTATTTGTCTCCctaacattattatgatttaaaattcaCATTATAAGGTTTacaagtgaaaacattttaaatgtcttactttttttctgtacagGTTCAATAATcttattaaaagcatgcatttgtttgatctgtaataaaatgtaaagcagcTCTTTTAAACTACAATTCCACCTGACTGCTGAACTAGCAATTAAGACTGCTTAGAAAATTCCTTTTCCATCTCGGCTTGGTGTGTGTGACAGAAAGCCAGGAGGTAAGCCATTTATAAAAGTCATCAAGAAATGTTTCATCCTAATTTGTCCAAGCTATATTACATTCCAAAAACCTTTtctcacaatatatttttgaattgcCTGGCATTATGGAGGGAGagcaaacatgtattattttaaagattaattgagGGGAGCCTTTATGTCTTTGTGATTATTTGACTTCActaatctaaatctaaattacTACACAGTGTAGTGTGAGCTTTAGAAAGGACAGATTGAAGAAGAGGTAAAAAGTTTCCTGAGTCctgagtttaatttaaattttattaaGGTGGAATGAAATGGGCTTGCTGAAAATTTACTTTCCAGACATTCTTGTATTGTTATCTTGTTTTGTTCAAGGAACATGAAAACCCTAGTATTTGAAATGTCAGGGGGAAATTTTGTATATAACAATAACTAATGATCATAAATAACTATTGCACTTTTACCTAGGAAAGAATAGACCATTTAGTTTTTCCATGTATATTAATTCAGGTATGGATGttaatcaataattaatttgatttagtaAAGGAAGAGGGCTTCCAAACtgaacagcattttattttcattattgttgcTACAAATGTTTAAGATACCTGTGAAATAGAGACAGAAAAATCACAtcctttaaacttttttttttttttttttttactatatcCTACAGTTTATGGTTAACCCCAACAATTCTGTTATCGGGAACAGAATGGGATAGTTTTATATTGGTTTAATTGTTCTCCTGGAAGTAGTCCAGAGGgcataaaagaaaaagcatgcTTCCTTCCCATACCCCCCTTCAAAAATACAAGTGGTAACTATGAATTTTAatgatggaaagaaagaaagaaagatggcaAATGTGGTACTTAAGTCAACCAATGTAGCAACTATGGGGAAACAACACTGCCCGTTACGTGCTCTTAAGAATTGTCTATGACAGGTCTTCTGTGTCGTTCTGTGTACCCCTACTTAAACCGATGTCAAAATGATACAAAACGCCTATGTCACATAGAAACCATGTGCCTTGATTCCAGGTTGCAGGGCTCGGGTAACCGTATGAGTGACTTTTTAATCATGAGGAAGTGGGGTGTTGAGTTTCCTTGCTGCTGGTTCTGGTGGGATGCAGTGAATTTAAATCATCACTTGCAATACTTCATCCCAGTATCAGAGTTGTAATCTACTAAGAAGGATGGCATTGATCCGATAGCAAGAGGACCCAGAATGCTGGACTATCAATTTATTCTGCAAAGGTCATGACGCACAGATGAGTGTTGGAATATTTTTGATctattgtttatgtttatttttatttttagccacATATAGGAGCTGATTTATGTGATTATATGAGAGCGAGAAGCTTCCAGGTTTGCCAGAACTTGAGCTTGTGGTTCTGAGtcacataatttgtatttgtttttgctttaaggTTGAAAACCTGTTGTTTTCctcatgtaaatatatgtaaaatgttaatttatttgtct

Function

GO: NA

KEGG:

id description
K14590 CMTR2, FTSJD1, AFT; cap2 methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020386 True 4534 mRNA 0.43 2 17824817 17831066

Neighbor

gene id symbol gene type direction distance location
AMCG00020384 NA coding upstream 214734 17597133 ~ 17610083 (+)
AMCG00020383 NA coding upstream 233509 17586137 ~ 17591308 (+)
AMCG00020381 mbtps1,LOC107596929 coding upstream 240502 17559537 ~ 17584315 (+)
AMCG00020378 pskh1 coding upstream 274975 17538125 ~ 17549842 (+)
AMCG00020379 NA coding upstream 304613 17517827 ~ 17520204 (+)
AMCG00020388 NA coding downstream 6317 17837383 ~ 17848350 (+)
AMCG00020387 calb2,LOC106573754,LOC105904495,LOC106560817 coding downstream 41757 17872823 ~ 17888787 (+)
AMCG00020399 NA coding downstream 74531 17905597 ~ 17912140 (+)
AMCG00020393 got2,got2a,LOC107694944,LOC107596935,LOC107738675,LOC107672286,LOC107726360,LOC107707915 coding downstream 86903 17917969 ~ 17926416 (+)
AMCG00020394 slc38a7,LOC107707914,LOC107711584,LOC107596460 coding downstream 99863 17930929 ~ 17941836 (+)
G62781 NA non-coding upstream 321554 17404385 ~ 17503263 (+)
G62681 nudt21 non-coding upstream 778667 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 789319 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 835238 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 1030937 16793664 ~ 16793880 (+)
G62909 NA non-coding downstream 123257 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 149967 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 156782 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 303927 18134993 ~ 18138267 (+)
G62989 NA non-coding downstream 366513 18197579 ~ 18200808 (+)
AMCG00020371 nutf2 other upstream 352948 17459144 ~ 17471869 (+)
AMCG00020370 NA other upstream 382106 17433642 ~ 17442711 (+)
G62632 NA other upstream 1008960 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 1220159 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 3352272 14467800 ~ 14472545 (+)
G62895 NA other downstream 97262 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 227492 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 236721 18067787 ~ 18072051 (+)
G63045 NA other downstream 501503 18332569 ~ 18334032 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 1766137 19597203 ~ 19602324 (+)

Expression


Co-expression Network