AMCG00020388


Basic Information

Item Value
gene id AMCG00020388
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17837383 ~ 17848350 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020388
ATGACCTCCGGCAGCGAGCGCAGCTGCAGCTTCGAGGAATACAAGGAGACGGCGGACTGGCTGCTGGCCTACACTAACCAGCGACCAAAGGTGGCCATAATCTGTGGGTCTGGCCTGGGAGGGTTGGCAGATCTGCTGGAAAACAAGACTGTTGTTCCCTACCAGGACATTCCCGGCTTCCCACAAAGCACAGGTCAGTCACCCCCCGGTGTGGCTCAGGAGGAAAGGGGGACAGCAAGGTTCCACTTCTATGAGGGCTATCCCATTACCAAGGTAACCTTCCCGGTCCGGGTGTTCCACCTCCTGGGAGTAGAAACTCTGATCGTCACCAATGCCGCAGGAGGGCTAAACCCCGATTTTAAAGTGGGCGACATCATGCTCATCAAGGACCACCTCAACATCCCGGGCTTTGCGGGTCAGAACCCCCTATGCGGCCCCAATGATGAAAGGTTTGGTAAACGTTTCCCCTGCATGTCCGACGCCTATGACAAGGACCTGTGCCAGATGGCCATGGAGACAGCGCAGGACCTGGGCTATTCCgacttcatccagcaggggGTGTACTGCATGTTGGGAGGGCCCTCGTTCGAGACCATAGCAGAATGCCTCATGCTCAGTCGCCTAGGGGCGGACGCCGTGGgcatgAGCACTGTGCCCGAGGTGGTTATGGCCAGGCACTGTGGCATGAGGGTGTTTGGCCTGTCACTCATCACCAACAAGGCAGTGATGGACTACAACAGCAAGCAGAAGGCCAATCATGAGGAGGTGCTCCAGACTGCCAAGATGAGGGCAAAGGACCTGCAGAAGCTGGTCAGCTGCCTTTTGGCCAAGATA

Function

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020388 True 834 mRNA 0.57 6 17837383 17848350

Neighbor

gene id symbol gene type direction distance location
AMCG00020386 NA coding upstream 6317 17824817 ~ 17831066 (+)
AMCG00020384 NA coding upstream 227300 17597133 ~ 17610083 (+)
AMCG00020383 NA coding upstream 246075 17586137 ~ 17591308 (+)
AMCG00020381 mbtps1,LOC107596929 coding upstream 253068 17559537 ~ 17584315 (+)
AMCG00020378 pskh1 coding upstream 287541 17538125 ~ 17549842 (+)
AMCG00020387 calb2,LOC106573754,LOC105904495,LOC106560817 coding downstream 24473 17872823 ~ 17888787 (+)
AMCG00020399 NA coding downstream 57247 17905597 ~ 17912140 (+)
AMCG00020393 got2,got2a,LOC107694944,LOC107596935,LOC107738675,LOC107672286,LOC107726360,LOC107707915 coding downstream 69619 17917969 ~ 17926416 (+)
AMCG00020394 slc38a7,LOC107707914,LOC107711584,LOC107596460 coding downstream 82579 17930929 ~ 17941836 (+)
AMCG00020396 NA coding downstream 96808 17945158 ~ 17950059 (+)
G62781 NA non-coding upstream 334120 17404385 ~ 17503263 (+)
G62681 nudt21 non-coding upstream 791233 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 801885 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 847804 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 1043503 16793664 ~ 16793880 (+)
G62909 NA non-coding downstream 105973 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 132683 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 139498 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 286643 18134993 ~ 18138267 (+)
G62989 NA non-coding downstream 349229 18197579 ~ 18200808 (+)
AMCG00020371 nutf2 other upstream 365514 17459144 ~ 17471869 (+)
AMCG00020370 NA other upstream 394672 17433642 ~ 17442711 (+)
G62632 NA other upstream 1021526 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 1232725 16582886 ~ 16604658 (+)
AMCG00020281 slc12a4 other upstream 3364838 14467800 ~ 14472545 (+)
G62895 NA other downstream 79978 17928328 ~ 17928904 (+)
AMCG00020408 NA other downstream 210208 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 219437 18067787 ~ 18072051 (+)
G63045 NA other downstream 484219 18332569 ~ 18334032 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 1748853 19597203 ~ 19602324 (+)

Expression


Co-expression Network