AMCG00020396


Basic Information

Item Value
gene id AMCG00020396
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17945158 ~ 17950059 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020396
ATACCCAACTTCCAACACTACTCTGGCTATCTACAGGCAGGGCCGGGCAAGTACTTCCATTACTGGTTTGTCGAGTCCCAGAACAACCCTTCCACTGACCCCCTGATCCTGTGGCTGAACGGCGGCCCAGGATGCAGCTCCATGGATGGCATGCTGGCAGAGAATGGCCCATTCCATcTGAATGATGATGGTACTGTCTACATAAACAAGTACAGCTGGAACACAATGGCCAATGTGATCTACCTGGAGTCCCCGGCTGGCGTGGGATTCTCCTACTCCACCTCCCAGAACTACCAGACTAGTGACCCGCAGGTGGCTGATGATAACTACCAGGCCCTTCTGGATTTCTTCTCCAAGTACCCCTTCTTTGCCAGCAATGACTTCTATGTCTTTGCGGAGAGTTATGGTGGGATCTATGCACCCACTCTGACCCAGAAAATCGCCAGCAGCTCCAACAACATCAACCTGAAGGGAATGGGTGTGGGTAATGGAATGAGCAGCTACGCCCTCAATGACCAGTCCCTCATCTACTTTGGATACTACCACGGTCTGTTCGGGGATAGCCTGTGGACCGAGCTGAACCAGTACTGCTGCTCTGGGGGCTCCTGCAACTTCTACAGCAGCACTGACGGCACCTGCCAGAACGCTGTGTATCAGGCCCTATACGTGATTCAGGACATTGGCCTCAACATCTACAACCTGTACTCACAGTGCTATGGGGGCACTGGGATCAGTGGTCGCTATGCTGCTGATGTCTCCAACCTTTTCCGCAATTACAATTTCAACTTCCAGGCTCCTGTGGAGGCCTCCATCCCTGGAGCCCCTCGCTGCATCAACGCCACGGCTATGTACTACTGGCTGAACAGTCCCGATGTGCGCACTGCTCTGCACATCCCCAGCTTTGTGCAGTCCTGGGAGCTCTGCAGCTCCACACCAATAAGCCAGTACAAACCTTGGTACTACAATGACCTGATCGCTGGCTATGTGGAGCAGTATCAGAAGATCACATTCCTCACTGTTATGGGTTCTGGCCACATGGTTCCCCAGTACAAACCCGGCCCAGCGCTGCAGATGTTCCAGAACTTCCTCTCCAACTCCTACTGA

Function

GO: NA

KEGG:

id description
K16296 SCPL-I; serine carboxypeptidase-like clade I

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020396 True 1104 mRNA 0.53 11 17945158 17950059

Neighbor

gene id symbol gene type direction distance location
AMCG00020394 slc38a7,LOC107707914,LOC107711584,LOC107596460 coding upstream 3322 17930929 ~ 17941836 (+)
AMCG00020393 got2,got2a,LOC107694944,LOC107596935,LOC107738675,LOC107672286,LOC107726360,LOC107707915 coding upstream 18742 17917969 ~ 17926416 (+)
AMCG00020399 NA coding upstream 33018 17905597 ~ 17912140 (+)
AMCG00020387 calb2,LOC106573754,LOC105904495,LOC106560817 coding upstream 56371 17872823 ~ 17888787 (+)
AMCG00020388 NA coding upstream 96808 17837383 ~ 17848350 (+)
AMCG00020395 cnot1 coding downstream 6649 17956708 ~ 17980551 (+)
AMCG00020406 e2f4,LOC106573204 coding downstream 169654 18119713 ~ 18134812 (+)
AMCG00020405 elmo3,LOC106561448,LOC105018213,LOC107732817,LOC107665726 coding downstream 188828 18138887 ~ 18178120 (+)
AMCG00020412 LOC107707912 coding downstream 232017 18182076 ~ 18186048 (+)
AMCG00020413 LOC107596504,LOC108411466,LOC107753522 coding downstream 237140 18187199 ~ 18195630 (+)
G62781 NA non-coding upstream 441895 17404385 ~ 17503263 (+)
G62681 nudt21 non-coding upstream 899008 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 909660 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 955579 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 1151278 16793664 ~ 16793880 (+)
G62909 NA non-coding downstream 4264 17954323 ~ 17955274 (+)
G62912 NA non-coding downstream 30974 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 37789 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 184934 18134993 ~ 18138267 (+)
G62989 NA non-coding downstream 247520 18197579 ~ 18200808 (+)
G62895 NA other upstream 16254 17928328 ~ 17928904 (+)
AMCG00020371 nutf2 other upstream 473289 17459144 ~ 17471869 (+)
AMCG00020370 NA other upstream 502447 17433642 ~ 17442711 (+)
G62632 NA other upstream 1129301 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 1340500 16582886 ~ 16604658 (+)
AMCG00020408 NA other downstream 108499 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 117728 18067787 ~ 18072051 (+)
G63045 NA other downstream 382510 18332569 ~ 18334032 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 1647144 19597203 ~ 19602324 (+)
AMCG00020438 NA other downstream 1681266 19631325 ~ 19636221 (+)

Expression


Co-expression Network