AMCG00020397


Basic Information

Item Value
gene id AMCG00020397
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17926512 ~ 17930590 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020397
CGTGAATTAACCAGCAAACCAGCAGTCGTGCTTTAGCCATTCAAGTGTGGTGCTGAGAAAACAGCTCAAATAATCTTACAGAACACTTTGTGGTATTGTAGTACAGTAAAAGTATAAGAGAGGAGGCAGGCATTTAAGTGAAAAAAGCATAAATACACTGTTTCATGTGTGCGGGTTTCTTTAAGACTATAGGAGAAGAGGGGTGGAGTGTTCCGTTTTCAAACTAAACCCCACCTCctgttatttttactttcactttgtTTCTTCCGTGTTATGTAAGATGGCCAGTATGGGTGCAGCTTTGGATGTCTCTGAGAAGGTGCCCGAGTGCCCACTGTGCCACCGGGTGTGCCAGATGCCCTCTGCCCTGCAGTGCGGTCACTGCTTCTGTCTGCGCTGCATCCAAGAGGTGTGGAGTGGATCCCCGACAGGTCCCTACTACTGCCCCGAGTGCAAGGCAGAGTACAGGAACATGCCTGCCCTGGGAAGaagggacacagacagagatatgGGTCCTTCCAGCTCTGCCCTGATGAGAGATGGTGCaatctccagctcctcctccttgCCCAGACAGGCGGGGGACTCTAGCGATGCaaggggaagaaagagagagggccCCAGCCtgggaggtgagagagagagcaagcgagTGCGAGATCTCTCGGGCTCTGCAGCACACACCGAGGAGCAGAGCAGTGTGCCCTGCAACTACTGCACCACAGCGGGGCAGCGGGCAGTGAAGACCTGCCTGGTGTGTGGGGCCTCTATGTGTGCGAAACACCTGCAGATCCACCTGGAGGTGCCCGTGTTCCAGAGTCATCCCCTGGTCCAGCCCACAGCAGACATCTCTGCCTGGAAGTGCCTGGAGCACCAGGAGATGCTCAAGATCTACTGCCAGGAGtgcagcttgtgtgtgtgcactgtcTGCACTGTCATCGGAGCCCACAAGAACCACttctgtgtcagtgtcagcGAGGCCGAGCAGGAGCTCAGGAAAAATTTGAAAGACGGAATGAATAAAATAGAGGAAAACGGACAGATTGTTCAAGACAGAGTGGGAGTGCTTCTGGAGAAGAAACTGAACATCCAGCGGATGGTGAGTGAGGCGCGGGCCCACGTGCAGCAGCAGTACGAGTCCATGCGGCAGGCCCTGCAGAAGGAGGAGCAGAAGGCCTTGCAGGTGCTTTCCCAGGAGGAAGCTCGGGTCCTGGGCAGCATCGAGGCACACGTGGAGCAGCTGGAGGACACGCTGCACACCATCGAGCAGAACGTGGGGGTCCTGGAGAAGCTGTCTGACACCACAGGGCCATCACGAATGCGAGACCAGGCATTCATCAAGGAGTACAGCAAGATAGCAAGCAGTGTGAGTGAGCTGTCCAGACCATTGGAGGAGCTGGAGCCCCCCCAGGAGATAAACCGCAGGCGGCTGGAGCGACTGCAGGAGTGGGCTGACAGGAGGCTGGAAGCAGTGCCCAATGGGACCTCACCCTCGCTGAACCCGGACACTGTGTACAGCAAGCTGGTCCTGTCCCAGGAGAACAGGTGCGTGTCCTACAGTGAGGAGGCCCAGCCATACCCACCACACGTTGCACGCTTCAGTAACTTCCCCCAGGTGCTGGGCTCCCAGGCTTGGGACGGGGGTCGCTGCTACTGGGAGGTGGAGGTGAGCGGCGAGGGGCGCTGGAAAGTGGGGGTGTGCGGTGAGCAGATCAGCAGGAAAGGGACTGATGATGCCTGTCGCCTGGGCTACAGCAATAACTCCTGGTGCCTGTATGGGGACTGCGGTAAAATGGAGGTGCTGCACAACAAGGAGGTCCTGCCCCTGGCTCACAGCCCCCCGTGCAGGGTGGGGGTGTTTGTGGATTTCGAGGACAGCTCCCTGTCCTTCTACAGCGTGACCGAGGACACTCTGACCTTACTGCATCGCTTCCAGGAGAGCTTCACCCAGCCCCTGTTCCCAGCCCTGGCAGCTTCCAAAACCCAGCTCACCATCTGCAGTGTTTTCCAGTGACAGCCATCAGCCCATAGACCCCCTCACCTACAATCACCAGCAGAATCACAAATATCTCAACAAGGAATAGTGTAGTTTGAGTGCAGTTGTAGATTTGTGTTACTCATTTAAAGTCTCCCTCTCCTGAATGTCTCAGTCAAGATCCACACAGGAGATAAGAAACAAGATGATAAATAAGACCATACCTTTCATTGaggaaatgaaaactaaaaaccaATTTAAATACAACCTAGTTTGTATTATGACTTTAGATTATGGCAGCtcagttttaattgtattgttttcgattttaatttcatacaatgtaaataaagctttacttttacattccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020397 True 2347 mRNA 0.54 7 17926512 17930590

Neighbor

gene id symbol gene type direction distance location
AMCG00020389 NA coding downstream 109624 17813315 ~ 17816888 (-)
AMCG00020390 NA coding downstream 115865 17805531 ~ 17810647 (-)
AMCG00020391 NA coding downstream 132013 17775984 ~ 17794499 (-)
AMCG00020392 NA coding downstream 164632 17708113 ~ 17761880 (-)
AMCG00020385 necab2,LOC106936069 coding downstream 252837 17659861 ~ 17673675 (-)
AMCG00020398 NA coding upstream 19744 17950334 ~ 17955926 (-)
AMCG00020400 NA coding upstream 50805 17981395 ~ 17984641 (-)
AMCG00020402 NA coding upstream 98783 18029373 ~ 18039986 (-)
AMCG00020401 NA coding upstream 120243 18050833 ~ 18055929 (-)
AMCG00020404 NA coding upstream 140706 18071296 ~ 18079151 (-)
G62880 NA non-coding downstream 75399 17848158 ~ 17851113 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding downstream 556066 17364823 ~ 17370446 (-)
G62715 NA non-coding downstream 750677 17120154 ~ 17175835 (-)
G62675 NA non-coding downstream 906960 17018790 ~ 17019552 (-)
G62660 NA non-coding downstream 935798 16990267 ~ 16990714 (-)
G62951 cnot1 non-coding upstream 37643 17968233 ~ 17969691 (-)
G62981 NA non-coding upstream 206890 18137480 ~ 18138298 (-)
G63015 NA non-coding upstream 253418 18184008 ~ 18186050 (-)
G63057 NA non-coding upstream 427235 18357825 ~ 18358910 (-)
G63092 NA non-coding upstream 466877 18397467 ~ 18398731 (-)
G62853 necab2 other downstream 300323 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 1108745 16794996 ~ 16817767 (-)
G62618 NA other downstream 1133345 16792866 ~ 16793167 (-)
AMCG00020336 NA other downstream 1301542 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 1650939 16272451 ~ 16275573 (-)
AMCG00020403 NA other upstream 56591 17987181 ~ 18015862 (-)
G62961 NA other upstream 75578 18006168 ~ 18039960 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 2357980 20288570 ~ 20299843 (-)
G63464 NA other upstream 3381612 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 4200252 22130842 ~ 22132737 (-)

Expression


Co-expression Network