AMCG00020398


Basic Information

Item Value
gene id AMCG00020398
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17950334 ~ 17955926 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020398
ttcTAACACTATGGTTATCTAACCGGACGTTATACAGGATTCGTAATCACCAGTAAAGACTCAAGGGAACATTATAAAGTCGATATATATTCTCATCTGGCACATACAGGTGAAATTTAATAGCTGGACAGAATATAATCAGTCATTCAACATGCCACATGAACTAGTGTAATATGTGGATTTTATTGATGttgtaaatacatgtattgtacTGTCTCCCGATGTGGTTTCTGAGTTTTCAGTTAACATTGTACAGTTTAATTACTAAAGCAACTCCTGTCTTGATGAACATTTCAAGATTACGAAAAACACCACCATCACATCAGACATATAATAGTATATGATTCTTGTTTAACAGGTAACTCTACTTCTAGTTGATCGTATCCTTACTAATGGGATGTTATTGCTCATCCGTAAACATTTTAGCAACAACAACGATATGGAGAAGTATGAGGTCCAAAGCTCCCTGGACTTCCCTCAGTGCAAAACATAAAACGATTCCACATTTGCTATTACAGGATACGGCAGTACTcaggaaaatgtataattctcCGAATCACAATCTTGCATTGGTTTCTGTAGCACCGTGTGGAAGTTCCCCGATCACATGACACACGACAGAGCAAGTCATATGACTTTACAGTAGTTTAAAACAGGGTTGAGAAAGCTGGTGCGAGCaacttctcttttctttcccccGGTGCATTGAAGCACTGTCCCGGTTTTGCGCGTACGTGACAGCGCACAAGGGAAGCATGTTCCTGTGTAGTTTCGTCTTCTCCTTAATACTTTCGAGCTGTGCCGCACAGATTGGTTACGATCCGGATGAAGTGATCGGTCTGCCTGGGCTCACCTTCAAACCGAATTTCAGGCAATGGTCCGGCTACTTGCAAGCAAGCCCCGGGAAGTATCTGCACTATTGGTTCGTGACCTCCCAGAGAGACCCGCTCGAAGACCCGCTTGTGTTGTGGTTGAACGGCGGTCCGGGCTGCAGCTCTCTCGATGGCTTCTTGTCGGAGAACGGACCTTTCCACGTGAATGACGACGGTGCCACTCTGTACCGCAATGAATTCAGCTGGAATCAAATCGCCAATGTATTGTACCTGGAGTCCCCGGCAGGTGTGGGCTACTCGTTTTCGGGTGATAAACAATATGCAACAAACGACGACGAGGTGGCTGATGACAACTACATAGCTTTGCAGGGTTTCTTCGACAAGTTCCCAGACTTCAAGAGGAATGACTTCTATATATTTGGGGAGAGTTATGGGGGGATTTACACACCAACACTGAGCCTCCGGATTGCCAATGGCTCTGCGATCGTTAATTTCAAGGTACTCCAGGCATTTGGTATAGTCTACAACTCTGGACTGAACGTGTATGCCCTGTACCGGAACTGTGCTGGTGGCTTGAAGGCACACTCCCGCTATCAAAGGGACATGGAGAACATCTTCCGCAGCTACAGGCACCACCTGGGTGCTGCAAGGctggTGTTGGAGCTGGACTCGGTCCCTCCCTGCATCAACAGCAGCGCTCAGACCAGCTGGCTGAACCGTGGGGATGTGCGCAAGGCCCTGCACATCCCAGATATCCTGCCTCTATGGGACATCTGCAGTGATGAAGTTGGTGAAAATTACAAAAGTGTGTATCGCACCATGAATGACATCTACCTAAAGCTGCTGGGCCTGGGCCTGAGGGTGCTGGTGTACAATGGAGACACTGACATGGCCTGCAACTTCCTGGGGGACAAGTGGTTTGTGGAGCTGCTCAACCAGAATAAAACCACAGAGTACAAGCCCTGGCTGTATGACCATCAGATCGCCGGCTTCTACCAGCAGTTTGGCAACGTCACCTTCCTTACTGTGAAGggTGCAGGACACATGGTTCCCCAGTGGGCTCCAGGACCAGCTTTTTACATGTTCCAGTCCTTCCTGGCTAACACTCCATATTAAAGGCCTGCCATCTTACTAATGGATTAATGATGGCAGTTAGTAAGCTGGAAGTTTCAATAAAGCCATTCAGCTTTTTATGTTGAAggaaagcattttcattttacagattGAAACTGTCTATTGGATTAAATCAATTCTTGGAGAATTCACTTGCTTACTTCTTTGTATGTGTTCCCTATGGAAAGTAGACTAAagacaaaattaatttgtaaatatatacaataatgttGCTTGTTGTACCAAGAGGCCTTTTCAATATGAATCATCTCAGGGAGGGATGCAGAATAAACTGGTCCTACCAATCACCAAGTGTAGTCAAAACTGCTTGTTTAATATTGAATGTCCTATTAATTGCAGTGTCTTCAAATTCCTATTTTGAGATTCTAAACCACACTTCAAAATGTAATCGGAAGTTAATGTAGgggaagtgttttttgttttgtctctaggATTTGAGGAAACCCTGTTCTTCAGATGTGGGCACTTCTTGCCGGTTTCCCTTTTTAGCCACCTGTTATAAGTTTGAAAGAAGTTTGTGTTTCTGAGACTGTATGGAGAAGAGGGGGGATGTGCATTTGATTGGCTAGTCTGCGGTGGGTGGTGAAGAGGTGCTGTGTGATCCAGGGtctttgtttcatgtttgtttttatgtcccaatttgtatttttctaataaaataaaaaaactagtCT

Function

GO: NA

KEGG:

id description
K13289 CTSA, CPY; cathepsin A (carboxypeptidase C)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020398 True 2641 mRNA 0.44 9 17950334 17955926

Neighbor

gene id symbol gene type direction distance location
AMCG00020397 NA coding downstream 19744 17926512 ~ 17930590 (-)
AMCG00020389 NA coding downstream 133446 17813315 ~ 17816888 (-)
AMCG00020390 NA coding downstream 139687 17805531 ~ 17810647 (-)
AMCG00020391 NA coding downstream 155835 17775984 ~ 17794499 (-)
AMCG00020392 NA coding downstream 188454 17708113 ~ 17761880 (-)
AMCG00020400 NA coding upstream 25469 17981395 ~ 17984641 (-)
AMCG00020402 NA coding upstream 73447 18029373 ~ 18039986 (-)
AMCG00020401 NA coding upstream 94907 18050833 ~ 18055929 (-)
AMCG00020404 NA coding upstream 115370 18071296 ~ 18079151 (-)
AMCG00020411 NA coding upstream 133173 18089099 ~ 18092504 (-)
G62880 NA non-coding downstream 99221 17848158 ~ 17851113 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding downstream 579888 17364823 ~ 17370446 (-)
G62715 NA non-coding downstream 774499 17120154 ~ 17175835 (-)
G62675 NA non-coding downstream 930782 17018790 ~ 17019552 (-)
G62660 NA non-coding downstream 959620 16990267 ~ 16990714 (-)
G62951 cnot1 non-coding upstream 12307 17968233 ~ 17969691 (-)
G62981 NA non-coding upstream 181554 18137480 ~ 18138298 (-)
G63015 NA non-coding upstream 228082 18184008 ~ 18186050 (-)
G63057 NA non-coding upstream 401899 18357825 ~ 18358910 (-)
G63092 NA non-coding upstream 441541 18397467 ~ 18398731 (-)
G62853 necab2 other downstream 324145 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 1132567 16794996 ~ 16817767 (-)
G62618 NA other downstream 1157167 16792866 ~ 16793167 (-)
AMCG00020336 NA other downstream 1325364 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 1674761 16272451 ~ 16275573 (-)
AMCG00020403 NA other upstream 31255 17987181 ~ 18015862 (-)
G62961 NA other upstream 50242 18006168 ~ 18039960 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 2332644 20288570 ~ 20299843 (-)
G63464 NA other upstream 3356276 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 4174916 22130842 ~ 22132737 (-)

Expression


Co-expression Network