Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00020400 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030127.1 |
| NCBI id | CM030127.1 |
| chromosome length | 42978078 |
| location | 17981395 ~ 17984641 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0032088 | negative regulation of NF-kappaB transcription factor activity | biological_process |
| GO:0050727 | regulation of inflammatory response | biological_process |
| GO:0018026 | peptidyl-lysine monomethylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0016279 | protein-lysine N-methyltransferase activity | molecular_function |
| id | description |
|---|---|
| K05302 | SETD6; N-lysine methyltransferase SETD6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00020400 | True | 1284 | mRNA | 0.55 | 8 | 17981395 | 17984641 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00020398 | NA | coding | downstream | 25469 | 17950334 ~ 17955926 (-) |
| AMCG00020397 | NA | coding | downstream | 50805 | 17926512 ~ 17930590 (-) |
| AMCG00020389 | NA | coding | downstream | 164507 | 17813315 ~ 17816888 (-) |
| AMCG00020390 | NA | coding | downstream | 170748 | 17805531 ~ 17810647 (-) |
| AMCG00020391 | NA | coding | downstream | 186896 | 17775984 ~ 17794499 (-) |
| AMCG00020402 | NA | coding | upstream | 44732 | 18029373 ~ 18039986 (-) |
| AMCG00020401 | NA | coding | upstream | 66192 | 18050833 ~ 18055929 (-) |
| AMCG00020404 | NA | coding | upstream | 86655 | 18071296 ~ 18079151 (-) |
| AMCG00020411 | NA | coding | upstream | 104458 | 18089099 ~ 18092504 (-) |
| AMCG00020410 | NA | coding | upstream | 119547 | 18104188 ~ 18110182 (-) |
| G62951 | cnot1 | non-coding | downstream | 11704 | 17968233 ~ 17969691 (-) |
| G62880 | NA | non-coding | downstream | 130282 | 17848158 ~ 17851113 (-) |
| G62770 | pard6a,LOC108250860,LOC106523998,LOC107101591 | non-coding | downstream | 610949 | 17364823 ~ 17370446 (-) |
| G62715 | NA | non-coding | downstream | 805560 | 17120154 ~ 17175835 (-) |
| G62675 | NA | non-coding | downstream | 961843 | 17018790 ~ 17019552 (-) |
| G62981 | NA | non-coding | upstream | 152839 | 18137480 ~ 18138298 (-) |
| G63015 | NA | non-coding | upstream | 199367 | 18184008 ~ 18186050 (-) |
| G63057 | NA | non-coding | upstream | 373184 | 18357825 ~ 18358910 (-) |
| G63092 | NA | non-coding | upstream | 412826 | 18397467 ~ 18398731 (-) |
| G63096 | NA | non-coding | upstream | 451884 | 18436525 ~ 18436939 (-) |
| G62853 | necab2 | other | downstream | 355206 | 17610664 ~ 17626189 (-) |
| AMCG00020346 | nup93,LOC103368977 | other | downstream | 1163628 | 16794996 ~ 16817767 (-) |
| G62618 | NA | other | downstream | 1188228 | 16792866 ~ 16793167 (-) |
| AMCG00020336 | NA | other | downstream | 1356425 | 16616323 ~ 16624970 (-) |
| G62421 | LOC103138816,LOC103466733,LOC108251456 | other | downstream | 1705822 | 16272451 ~ 16275573 (-) |
| AMCG00020403 | NA | other | upstream | 2540 | 17987181 ~ 18015862 (-) |
| G62961 | NA | other | upstream | 21527 | 18006168 ~ 18039960 (-) |
| AMCG00020446 | cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 | other | upstream | 2303929 | 20288570 ~ 20299843 (-) |
| G63464 | NA | other | upstream | 3327561 | 21312202 ~ 21312605 (-) |
| AMCG00020471 | NA | other | upstream | 4146201 | 22130842 ~ 22132737 (-) |
