AMCG00020401


Basic Information

Item Value
gene id AMCG00020401
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18050833 ~ 18055929 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020401
AGGCCCAAGAATTTTCCACCTGGTCCTCAACCTTTTCCGATATTTGGGAATCTGTTGCAGCTAAACCTGAAGAACCCCATAAAAGACTTTGAAAAGCTCTCCAAGCGCTATGTGAAAGTGTACAGCATGTTACTGTATGGTTTGCAGGCAATGAAGGAAGCCTTGATGACTCGGGGAGTTGAATTTGCTGGGAGGCCCCAGGGCCTGCTGATCAATCATGCTAGTGAGAATAAAGGTATACTTGTACTCAACTATGGCCCCACATGGAAGGAGCAGCAGCGGTTCGCGCTGAGCACCCTGAGGGACTTCGGCCTGGGAAAGCTGACAGCCTTGGATTCTCAAACATTGTTCCAAAATGCCATCTCCAATGTCATCTGTGCCATCCTGTTTGGATCCCGCTACAACTATGAGGATCAGCCCTTCAAGTCCCTGATGcgaataaaaactgaaaacacaaaaattaaTAATGGACCCTGGGGCATGATTTACAATACCATACCCCTAATTAGGAGCTTGCCTCTGCCCTTCCGGAAATACtttgaaaacagaagaaagatgAAGGCATTTTTACTGACGAAGGTGGCTGAGAACAAGGAGACATGGGTCCCAGGACAGCCACAGGACATTCTTGACTGCTACCTCGATGAAATTGAAAAGAGAGGTAATGACGGCTCCTCCTTTGATGATGGTTTCATGGTGGCCCTCTTGTTGGATCTCTTTCTTGGTGGAACAGACACCACCTCCACTACTCTCCGTGTGGGCCTCTTGCAACTCATGATGCATCCAGATGTGCAAGGCCCGCGGATGTGTCTGGGTGAGGAGCTGGCATGCATGGAGCTCTTTTTGTTCTTGGTGACGCTGCTGCGCTGCTTCCTGTTCCACTGGCCCCAGGACGGCGCGGAGCCCAACCTCACACCTCACTTTGGAATCGTCCAGGGACCCAAACCCTACCGACTGGGAGTGAGGCTCAGGGGACAGCAGTCTGGGTGAAGCCCCACAGCTGTACAGCATCTCCATTCAGAGATGCACCCCTGACACCACACTTCCAGCAGGCTCAAACAGTAGTTCCTTACAAATCTTATAGCATTTAGTGCTTTGAAATTACTTTTCTCTGTATTGCCTTACACTAGAAATAAGACAAATCAAatatcagaaatgtttttaaCACTACATTGATTAGCTGTACTTTGGACTGTTTAACACTGATCTGATTTAAGATTTTACCTGTATACATATTTAGATATTGACATGAACTGAGCCTTGggttatttttggtttctttatcatacaaatgtttattaaagttTACATGTCTTTCACACTTAGGTTTCCTAATTTCAATAAACctt

Function

GO:

id name namespace
GO:0005488 binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020401 True 1349 mRNA 0.46 8 18050833 18055929

Neighbor

gene id symbol gene type direction distance location
AMCG00020402 NA coding downstream 10847 18029373 ~ 18039986 (-)
AMCG00020400 NA coding downstream 66192 17981395 ~ 17984641 (-)
AMCG00020398 NA coding downstream 94907 17950334 ~ 17955926 (-)
AMCG00020397 NA coding downstream 120243 17926512 ~ 17930590 (-)
AMCG00020389 NA coding downstream 233945 17813315 ~ 17816888 (-)
AMCG00020404 NA coding upstream 15367 18071296 ~ 18079151 (-)
AMCG00020411 NA coding upstream 33170 18089099 ~ 18092504 (-)
AMCG00020410 NA coding upstream 48259 18104188 ~ 18110182 (-)
AMCG00020409 NA coding upstream 115691 18171620 ~ 18175979 (-)
AMCG00020414 NA coding upstream 139811 18195740 ~ 18225630 (-)
G62951 cnot1 non-coding downstream 81142 17968233 ~ 17969691 (-)
G62880 NA non-coding downstream 199720 17848158 ~ 17851113 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding downstream 680387 17364823 ~ 17370446 (-)
G62715 NA non-coding downstream 874998 17120154 ~ 17175835 (-)
G62675 NA non-coding downstream 1031281 17018790 ~ 17019552 (-)
G62981 NA non-coding upstream 81551 18137480 ~ 18138298 (-)
G63015 NA non-coding upstream 128079 18184008 ~ 18186050 (-)
G63057 NA non-coding upstream 301896 18357825 ~ 18358910 (-)
G63092 NA non-coding upstream 341538 18397467 ~ 18398731 (-)
G63096 NA non-coding upstream 380596 18436525 ~ 18436939 (-)
G62961 NA other downstream 10873 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 34971 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 424644 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 1233066 16794996 ~ 16817767 (-)
G62618 NA other downstream 1257666 16792866 ~ 16793167 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 2232641 20288570 ~ 20299843 (-)
G63464 NA other upstream 3256273 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 4074913 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 4384863 22440792 ~ 22466767 (-)
G63679 NA other upstream 4487913 22543842 ~ 22544689 (-)

Expression


Co-expression Network