AMCG00020403


Basic Information

Item Value
gene id AMCG00020403
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17987181 ~ 18015862 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020403
atgttgGGATTGCTGTTTCTCCTGTGTGCTGGACTTCTCCTCCTCTATTTCCTGTGGAAGACACGGAGGCCCAAGAATTTTCCACCTGGTCCTCAACCTTTTCCAATATTTGGGAATCTGCTGCAGCTAAACCTGAAGAATCCCTTGAAAGACTTTGATAAGCTGTCCGAGCACTATGGGAAAGTGTACAGCATTTATTTCGGGAGCAGGCCGGCTGTGTTACTGCATGGTTTGCAGGCAGTGAAGGAAGCCCTGATGATTCGGGGAGTTCAATTTGCTGGGAGGCCCCAGGGCCTGCTGATCAACCACTTTCTCGAGGATAAAGtaatttacattacattgaTGATGTCACAGATGTGCTCAACCCTGCATTTTCAGAATATGACTGCCTCCTTGTGGGCAGGCTGCCTCATTGCACGTGTGATTATAGTcaactatggtcccagctggaAGGAGCAGCGGCGGTTCGCTCTGAGCACTCTGAGGAACTTCGGCCTTGGAAAGCTGTCCATGGAGGAGAGGATCCTGGAGGAGACTTCACATCTCAGCTCATACATAGAGAAGAGTGCAGGACAGTCCTTGGACCCTCAAACATTGTTCCACAATGCCTTCTCCAATGTCATCTGTGCCATCCTGTTTGGATCCCGCTACAACTATGAGGACCAGTCTTTCCAGTCCCTGATGCATATGATATCTGAAACCACAAAAATTAATAATGGCCCCTGGGGCATGACACGGAGGCCCAAGAATTTTCCACCTGGTCCTCAGCCTTTTCCGATATTTGGGAATCTGTTGCAGCTAAACCTGAAGAACCCCATGAAAGACTTTGAAAAGCTGTCCGAGCGCTATGGGaaagtgtacagtgtgtatttCGGGGGCAGGCCGGCTGTGTTACTGCATGGTTTGCAGGCAGTGAAGGAAGCCCTGATGACTCGGGGATCCTTGGACCCTGAAACATTGTTCCACAATGCCTTTTCAAATGTTATCTGTGCCATACTGTTTGGATCCCGCTACAACTATGAGGACCAGTCCTTCCAGTCCCTGATGCGAATTATATCTGAAACCACAAAAATTGGTAATGGACCCTGGGGCATGAGAGGTAATGATGGCTCCTCCTTTGATGAAGGCTTCATGATGGTCTTCTTGTTGGATCTCTTTATTGCCGGAACAGACACCAGCTCCACTACTCTCCGCGTGGGCCTCTTGCAGCTCATGATGCATCCAGATGTGCAAGCGCGGTGCCACCAGGAGATTGACACTGTCCTTAGAGGGAATGAGCAGGTTTGCTATGAGGACAGGCATAGGATGCCCTATGTCCAAGCTGTGATCCACGAAACACAGCGCTATGGAAGTGTCGTCCCTCTCAGTGTCTTCCACGCCACCACTCAGGACACACAGGTGCTGGGCTACAGCATTCCAAAGGGGCTGGCACGCATGGAGCTCTTCTTGTTCTTGGTGACGCTGCTGCGCCGCTTCCAGTTCCACTGGCCCCAGGACGGCGGGGAGCCCGACCTCACACCTCACTACGGAATCGTCCAGGGACCCAAACCCTACCGACTGGGAGTGAGGCTCAGAGGACAGCAGTCT
>TU78823
AGCTAAGGAAGCACAGACTTTTCCATTGATATAGTTTTAATGTCaactaaatacatttagttATCAAGTAAGTTAAAGATCAAGTCTTGGCTTGTTGACAAGTCAGTGCATAGTTTGGGTAAAGAATTGTATGCTTTGTGTCTACTAACCAATTGAACAACAGTGAAGGAGGAGTCAGTGCTCCCTATATACAGGCTTGTGGAGTGCAGTGCAATAACAAACACAGGCACAATGCTGGGCTCTGTGTTTCTCCTGTGGGCTGGGGTTCTCCTCCTCTATTTCCTGTGGAAGACACGGAGGCCCAAGAATTTTCCACCTGGTCCTCAGCCTTTTCCGATATTTGGGAATCTGTTGCAGCTAAACCTGAAGAACCCCATGAAAGACTTTGAAAAGCTGTCCGAGCGCTATGGGaaagtgtacagtgtgtatttCGGGGGCAGGCCGGCTGTGTTACTGCATGGTTTGCAGGCAGTGAAGGAAGCCCTGATGACTCGGGGAGTTGAATTTGCTGGGAGGCCCCAGGGCCTGCTGATCAACCACATTAGCGAGAATAAAGGTGTGATTATAAACAGCTATGGCCCCAGCTGGAAGGAGCAGCGGCGGTTCGCTCTGACCACTCTGAGGAACTTCGGCCTGGGAAAGCTGTCCATGGAGGAGAGGATCCTGGAGGAGACTTCGCATCTCAGCTCGTACATAGAGAAGAGTGCAGGTCAGTCCTTGGACCCTGAAACATTGTTCCACAATGCCTTTTCAAATGTTATCTGTGCCATACTGTTTGGATCCCGCTACAACTATGAGGACCAGTCCTTCCAGTCCCTGATGCGAATTATATCTGAAACCACAAAAATTGGTAATGGACCCTGGGGCATGGTATGTGTGCACTATCATATTcctattttcctgtttattacTGAAagttataaaaaatgtatgatcaTGAGCAACGTAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020403 True 1587 mRNA 0.51 11 17987181 18015862
TU78823 False 951 TUCP 0.46 4 17994544 17997017

Neighbor

gene id symbol gene type direction distance location
AMCG00020400 NA coding downstream 2540 17981395 ~ 17984641 (-)
AMCG00020398 NA coding downstream 31255 17950334 ~ 17955926 (-)
AMCG00020397 NA coding downstream 56591 17926512 ~ 17930590 (-)
AMCG00020389 NA coding downstream 170293 17813315 ~ 17816888 (-)
AMCG00020390 NA coding downstream 176534 17805531 ~ 17810647 (-)
AMCG00020402 NA coding upstream 13511 18029373 ~ 18039986 (-)
AMCG00020401 NA coding upstream 34971 18050833 ~ 18055929 (-)
AMCG00020404 NA coding upstream 55434 18071296 ~ 18079151 (-)
AMCG00020411 NA coding upstream 73237 18089099 ~ 18092504 (-)
AMCG00020410 NA coding upstream 88326 18104188 ~ 18110182 (-)
G62951 cnot1 non-coding downstream 17490 17968233 ~ 17969691 (-)
G62880 NA non-coding downstream 136068 17848158 ~ 17851113 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding downstream 616735 17364823 ~ 17370446 (-)
G62715 NA non-coding downstream 811346 17120154 ~ 17175835 (-)
G62675 NA non-coding downstream 967629 17018790 ~ 17019552 (-)
G62981 NA non-coding upstream 121618 18137480 ~ 18138298 (-)
G63015 NA non-coding upstream 168146 18184008 ~ 18186050 (-)
G63057 NA non-coding upstream 341963 18357825 ~ 18358910 (-)
G63092 NA non-coding upstream 381605 18397467 ~ 18398731 (-)
G63096 NA non-coding upstream 420663 18436525 ~ 18436939 (-)
G62853 necab2 other downstream 360992 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 1169414 16794996 ~ 16817767 (-)
G62618 NA other downstream 1194014 16792866 ~ 16793167 (-)
AMCG00020336 NA other downstream 1362211 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 1711608 16272451 ~ 16275573 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 2272708 20288570 ~ 20299843 (-)
G63464 NA other upstream 3296340 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 4114980 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 4424930 22440792 ~ 22466767 (-)
G63679 NA other upstream 4527980 22543842 ~ 22544689 (-)

Expression


Co-expression Network