AMCG00020406 (e2f4,LOC106573204)


Basic Information

Item Value
gene id AMCG00020406
gene name e2f4,LOC106573204
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18119713 ~ 18134812 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020406
ATAGGGGACGAGAGCGACCCACCAGAGCCGAATCGAGCCGAGCCAGCGGACCCTCCCTGGACAGACCTGGCTGCCATGGCCGAGCCGCTCCAGGCCCAGACCCCGAGCCGACACGAGAAGAGTCTGGGTCTGCTCACCACCAAGTTTGTGACTTTACTGCAAGAGGCCAAGGACGGAGTACTGGATCTCAAAGTAAAATCCAAGAACAGCATCCAGTGGAAGGGGGTGGGCCCCGGCTGCAACACGCGGGAGATCGCAGACAAGCTGATTGACTTGAAGgcagagctggaggagctggaccgGCGGGAGCACGAGCTGGACCAGCAGAAGGTGTGGGTGCAGCAGAGCATCAAGAACATGGAAACATTAGCGTATGTTACCCATGAAGACATCTGCGGCTGCTTCCAAGGAGATACCCTGTTGGCCATTCGGGCTCCATCAGGCACACAGTTAGAGGTGCCAATACCAGAAGGGGACACGGCCAGCTCTCCCCCCGTGGTGCTGCCAGTGCCCCCGCCTGATGACTTGTTCCAGAGCCTGCCCACGTCCAGCACACCTGCCACCCCCAAACGTGCCGCCCAGCCCAGCATCCCCCAGCCCCTGCCCTCCGCTCCCCTTCCCGCGCCCGCCAGTCACAGCATCCTGCCCACCACAGCCTCTGCGCCACCTCCAGCTGTCGCTGCCGTAGAACCTCCCAGCAACACTCCTAGTGCACTTGACCTCGCCCACCCCACAACAGACACAGCAGCCAGTCAGACGTCATCATTGGACACCCAAGCCCTTCAATCTTCTGCATCATTGGACAGCAGTTCCTCTCTTCCGGCCCCTTCTGTTGTCTTTGAACCTATCAAATCAGATCCTTCAGAATTGTTGGATTTCCCTAAAGACTTTCCAGAAATGTTTGACCCCACAAAAGaATGTATTGGTGCAGACCTGCTTGAAGAGCTGATGTCTTCAGAAGTCTTCTCACCACTGCTACGGCTCTCCCCTCCCCCCGGCGACCACGATTACGTCTACAACCTGGACGAAAGTGAAGGCCTCTGTGACCTGTTTGATGTCCCCATCCTTAACCTTTGACCCCTGAACTTTGCCACTGGGCGCTTTGTGAATAGGGactttacagaaacaaatatttttaccctttttttgcgagagagaaaaaaaataagaattttcATCTATTTTTGGATCCTTCTTTGTTATAAGCTGTTTCGAGGACAgtttttatttcgttttttgCCCCCTTTTACAAATTTCCTGGACATGGACAATACCAATTTCATCTGAAAAAGAAgatccctgtgtgtgtgtgtgagcttgCAGTTACAGAAGTGGCTTCAAGGAAGAAACGCATTCTTCTTGGTCCTATAGCTTTAAAAACTGTTGTATCACCCACTTGTGgactttttttgttatatattttttggcagTTTGTTTAAACAGACTACATGGGAAAGTATATTAACTTAAGGAATTTGTATTTAAGTTTTGGACAAGACTTGGCAGCATGGTGAAGAAATCCATCAGAGACACCAGTGTACCACCTGCAGGCTTTAAAGGAAGCTGTGGCTTGTTgcctcttttttgtttgtttgtttgttctccctctttcttgtcaggaataaaatgaaagcagGAAGAATGCATTGGCAGCTGGAACTGAGCCGGTCTAAGAGTCCTTACTCCAGCAGGTGTCGCTGCAGCCCCAGTCTTGTTTTCTGGACACTTACTGAAATGGAGCAGCTGCACGGTGGCATGGTCTCACTGCTGTGACTCAAAACATGCGGCCGTCCAACCCCCATAACTCAGTCCCTCCCCTTCTGTGGATCCAGACTCTAAGCCACAAATAcagtatcttttttttgttttttgttttttttgttttgctttttttaagcTGCATCAGCTTGGGTTGCTTTTCTGTCAGTCTTGCTTTATAGAGATTCTCCCTCTCAGTTAAGGACAGTACTGAACAGGTGTAATTATTCTCACTTTCTCATTAAAACAAGAGACTGCTTTGTGTGTCCTGTGAATATAAAAATGAGAACACTTATAAAGAAATCCTTTTTGGAGAACTGAGAGATTGTTCCTGGCTTTTAGTGAATCCACCAGGCCAGTCAGTAACGTTATGGATGAGGGCCTGCACATGCTTTTATCTGTTTAGTACAAAATAACTTCATTACAGCCACAAGTCATGAACAATATATGTACACACTGTTCGCATCCCCTGTTTGTCAATGTTTCTGTTCTGTGAATAGTAATAATTGATGTATACAAAAATCag

Function

symbol description
e2f4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within mitotic cell cycle and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in adenohypophysis; head; and trunk. Orthologous to human E2F4 (E2F transcription factor 4).

NR:

description
PREDICTED: transcription factor E2F4

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K04682 E2F4_5; transcription factor E2F4/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020406 True 2284 mRNA 0.48 10 18119713 18134812

Neighbor

gene id symbol gene type direction distance location
AMCG00020395 cnot1 coding upstream 139162 17956708 ~ 17980551 (+)
AMCG00020396 NA coding upstream 169654 17945158 ~ 17950059 (+)
AMCG00020394 slc38a7,LOC107707914,LOC107711584,LOC107596460 coding upstream 177877 17930929 ~ 17941836 (+)
AMCG00020393 got2,got2a,LOC107694944,LOC107596935,LOC107738675,LOC107672286,LOC107726360,LOC107707915 coding upstream 193297 17917969 ~ 17926416 (+)
AMCG00020399 NA coding upstream 207573 17905597 ~ 17912140 (+)
AMCG00020405 elmo3,LOC106561448,LOC105018213,LOC107732817,LOC107665726 coding downstream 4075 18138887 ~ 18178120 (+)
AMCG00020412 LOC107707912 coding downstream 47264 18182076 ~ 18186048 (+)
AMCG00020413 LOC107596504,LOC108411466,LOC107753522 coding downstream 52387 18187199 ~ 18195630 (+)
AMCG00020415 NA coding downstream 203625 18338437 ~ 18358845 (+)
AMCG00020420 NA coding downstream 247331 18382143 ~ 18389911 (+)
G62916 NA non-coding upstream 87574 17987848 ~ 18032139 (+)
G62912 NA non-coding upstream 136192 17981033 ~ 17983521 (+)
G62909 NA non-coding upstream 164439 17954323 ~ 17955274 (+)
G62781 NA non-coding upstream 616450 17404385 ~ 17503263 (+)
G62681 nudt21 non-coding upstream 1073563 17030193 ~ 17046150 (+)
G62975 NA non-coding downstream 181 18134993 ~ 18138267 (+)
G62989 NA non-coding downstream 62767 18197579 ~ 18200808 (+)
G62990 kifc3,LOC107670565 non-coding downstream 67032 18201844 ~ 18202070 (+)
G62991 NA non-coding downstream 70148 18204960 ~ 18205970 (+)
G62992 NA non-coding downstream 73599 18208411 ~ 18208650 (+)
AMCG00020407 NA other upstream 47662 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 53924 18058558 ~ 18065789 (+)
G62895 NA other upstream 190809 17928328 ~ 17928904 (+)
AMCG00020371 nutf2 other upstream 647844 17459144 ~ 17471869 (+)
AMCG00020370 NA other upstream 677002 17433642 ~ 17442711 (+)
G63045 NA other downstream 197757 18332569 ~ 18334032 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 1462391 19597203 ~ 19602324 (+)
AMCG00020438 NA other downstream 1496513 19631325 ~ 19636221 (+)
AMCG00020470 NA other downstream 4000556 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 4221362 22356174 ~ 22409493 (+)

Expression


Co-expression Network