AMCG00020407


Basic Information

Item Value
gene id AMCG00020407
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18067787 ~ 18072051 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020407
ATGTTGTTCCACAATGCCTTTTCCAATGTCATCTGTGCCATCCTGTTTGGATCCCGCTACAAATATGAGGACCAGTCCTTCCAGTCCCTGATGCGAATGAtatctgaaaatacaaaaattaataatGGACGCTGGGGCATGATTTACGATACCATACCCCTAATTAGGAGCTTGCCTTTGCCTTTCCgcaaaatgattgaaaacagaaagaagGTGAAAGCGTTTTTGCTGACGAAGGTGGCTGAGCACAAGGAGACACGGGTCCCAGGACAGCCGCGGGACATTCTTGACTGCTACCTCGATGAAATTGAAAAGAGAGGTAATGATGGTTCCTCCTTTGATGACGGCTTCATGGTGGCCCTTATGATGGATCTCTTTTTTGCCGGAACAGACACCAGCTCTACTACTCTCCGCGTGGGCCTCTTGCAGCTCATGTTGCATCCAGATGTGCAAGGTCAGTAA
>TU78779
GTGAAGGAGGAGTCAGTGCTCCCTATATACAGGCTTGTGGAGTGCAGTGCAATAACAAATACAGGCACAATGCTGGGCTCCCTGTTTCTCCTGTGGGCTGGGCTTCTCCTCCTCTATTTCCTGCTGAAAACACGGAGGCCCAAGAATTTTCCACCTGGTCCTCAACCTTTTCCGATATTTGGGAATCTGCTGCAGCTAAACCTGAAGAACCCCATTAAAGACTTTGAAAAGGTGTGATTATAGTCAACTATGGCCCCACCTGGAAGGAGCAGAGGCGGTTTGCTCTGACCACTCTGAGGAACTTCGGCCTGGGAAAGCTGTCCATGGAGGAGAGGATCCTGGAGGAGACTTCGCATCTCAGCTCATACATAGAGAAAAGTGCAGGTCAGTCATTGGACCCTAAAATGTTGTTCCACAATGCCTTTTCCAATGTCATCTGTGCCATCCTGTTTGGATCCCGCTACAAATATGAGGACCAGTCCTTCCAGTCCCTGATGCGAATGAtatctgaaaatacaaaaattaataatGGACGCTGGGGCATGATTTACGATACCATACCCCTAATTAGGAGCTTGCCTTTGCCTTTCCgcaaaatgattgaaaacagaaagaagGTGAAAGCGTTTTTGCTGACGAAGGTGGCTGAGCACAAGGAGACACGGGTCCCAGGACAGCCGCGGGACATTCTTGACTGCTACCTCGATGAAATTGAAAAGAGAGGTAATGATGGTTCCTCCTTTGATGACGGCTTCATGGTGGCCCTTATGATGGATCTCTTTTTTGCCGGAACAGACACCAGCTCTACTACTCTCCGCGTGGGCCTCTTGCAGCTCATGTTGCATCCAGATGTGCAAG

Function

GO:

id name namespace
GO:0005488 binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020407 False 462 mRNA 0.47 3 18070620 18072051
TU78779 True 858 TUCP 0.48 5 18067787 18072043

Neighbor

gene id symbol gene type direction distance location
AMCG00020395 cnot1 coding upstream 87236 17956708 ~ 17980551 (+)
AMCG00020396 NA coding upstream 117728 17945158 ~ 17950059 (+)
AMCG00020394 slc38a7,LOC107707914,LOC107711584,LOC107596460 coding upstream 125951 17930929 ~ 17941836 (+)
AMCG00020393 got2,got2a,LOC107694944,LOC107596935,LOC107738675,LOC107672286,LOC107726360,LOC107707915 coding upstream 141371 17917969 ~ 17926416 (+)
AMCG00020399 NA coding upstream 155647 17905597 ~ 17912140 (+)
AMCG00020406 e2f4,LOC106573204 coding downstream 47662 18119713 ~ 18134812 (+)
AMCG00020405 elmo3,LOC106561448,LOC105018213,LOC107732817,LOC107665726 coding downstream 66836 18138887 ~ 18178120 (+)
AMCG00020412 LOC107707912 coding downstream 110025 18182076 ~ 18186048 (+)
AMCG00020413 LOC107596504,LOC108411466,LOC107753522 coding downstream 115148 18187199 ~ 18195630 (+)
AMCG00020415 NA coding downstream 266386 18338437 ~ 18358845 (+)
G62916 NA non-coding upstream 35648 17987848 ~ 18032139 (+)
G62912 NA non-coding upstream 84266 17981033 ~ 17983521 (+)
G62909 NA non-coding upstream 112513 17954323 ~ 17955274 (+)
G62781 NA non-coding upstream 564524 17404385 ~ 17503263 (+)
G62680 NA non-coding upstream 1032289 17031817 ~ 17035498 (+)
G62975 NA non-coding downstream 62942 18134993 ~ 18138267 (+)
G62989 NA non-coding downstream 125528 18197579 ~ 18200808 (+)
G62990 kifc3,LOC107670565 non-coding downstream 129793 18201844 ~ 18202070 (+)
G62991 NA non-coding downstream 132909 18204960 ~ 18205970 (+)
G62992 NA non-coding downstream 136360 18208411 ~ 18208650 (+)
AMCG00020408 NA other upstream 1998 18058558 ~ 18065789 (+)
G62895 NA other upstream 138883 17928328 ~ 17928904 (+)
AMCG00020371 nutf2 other upstream 595918 17459144 ~ 17471869 (+)
AMCG00020370 NA other upstream 625076 17433642 ~ 17442711 (+)
G62632 NA other upstream 1251930 16814374 ~ 16815857 (+)
G63045 NA other downstream 260518 18332569 ~ 18334032 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 1525152 19597203 ~ 19602324 (+)
AMCG00020438 NA other downstream 1559274 19631325 ~ 19636221 (+)
AMCG00020470 NA other downstream 4063317 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 4284123 22356174 ~ 22409493 (+)

Expression


Co-expression Network