AMCG00020408


Basic Information

Item Value
gene id AMCG00020408
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18058558 ~ 18065789 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020408
ATGTGTCTGGGTGAGGGACTGGCACGCATGGGGCTCTTCTTGTTCTTGGTGATGCTGCTGCGCCGCTTCCAGTTCCACTGGCCCCAGGACGGCGGGGAGCCTGACCTCACACCTAAGTTCGGAATCACGCAGGAACCCAAACCCTACCAACTGGGAGTGAAGCTCAGGGGACAGCAGTCTGGGTGCTGGCGCAAGTCTCCTGGTGGTCTCGCATCTGCGAAGAAGGCAGACTCAACGGAGCATGGTGCTGGATGTGACAGCGTGTGGAAGAAAGTGCCCCTTGGCCCGCGGATGTGTCTGGGTGAGGGGATGGCGTGCATGGGGCTGTTCTTGTTCTTCGTGACGCTGCTGCACCGCTTCCAGTTCCACTGGCCCCAGGATGGCGGGGAGCCCAACCTCACGGCTCACTACGGAATCATCCAGGGAACCAATCCTACCGACTGGGAGTGA
>TU78775
GTCCACCCCCCCATAATATATATCATGTATACATTAACTTCAAGTCAATATATAGATCACACACAGTACATGTGAATGCATGcatttgttgttgctgctttgttttcagtacaaaaagataaaaaaaatctactgtGTCCATTTGCTTGTATCTCATTGCACTGCTCCTGTTCCCTTGCCTAATGCAGGGCACCACCATCATCCCCAACCTGTCCTCCGTGCTGTATGAGGAGGGCAAGTGGAAGTTTCCACACGAATTCAACCCGTCTAACTTCCtgaaggaggagggggagtTTGTGAAGCCAGAGGCCTTTGTGCCCTTCTCCCTGGGCCCGCGGATGTGTCTGGGTGAGGGACTGGCACGCATGGGGCTCTTCTTGTTCTTGGTGATGCTGCTGCGCCGCTTCCAGTTCCACTGGCCCCAGGACGGCGGGGAGCCTGACCTCACACCTAAGTTCGGAATCACGCAGGAACCCAAACCCTACCAACTGGGAGTGAAGCTCAGGGGACAGCAGTCTGGGTGAAGCCCACAGCTGTACTGCATGTCCATTCAGAGATGCACCCCTGACACCACACTGCCAGCGGGGTCAAAGAGTAGTTCCTTTATAACCTTATAGCATTTAGTGCTATGAAATTACTTTTCTCTGTATTGCTAATACCACTTACAGTataaataagacaaaacaataGATCACAAGTCTGATTTTAGCACTAAAGTGATTAGCTATACTTTGGACTGTTTAACACCGATCTGATTTGGGATTTTAcctgtatatacatttagatatttacattaattgaaTGTTGGGTtatgtttggtttctttttcataCAACTATTGCTGTTCATACTAATTGTACTACTCTTTCACAATTAGGTTTCATGATTTCCACTAGCCATGTTGAGGTGCACCTCAGTGTGGCCATTCAAGTCCAGGACGTTTCCACTATGGCCCAGGTGCACCTCTGACTGTGcccaaactagtttcaggaggcactgTTTTGTACATCGTACTGGATGATTCCCAAACTGGTCTGGGGCACGTTCACAACTAGGCATAAGTAAAACAGACTTTGAAGTGATTCCCACTGTGTCTCTCttatgatttgtgtttgttgtaattGTATATCCATACTATTCACAGGTACAAAACATTCTGAAACAATACACAACTGGCATTCTGCACATGaagttattttttctgttgctgCTGGTGGTTAGGGATATCAAGCAATTTCAGGCATGTCACAAATTATTCTTAGTATTCACAGGTAAAACAGAGActgtgaaacaattcacaatGAGTCTTCTGATCATTCCAGGTGGTTTGGACGTGTGCTGTGGTTGGGGAGATAAAACGAGTTTACCCATGTCAGGCTTAGTGTGTGCCTGTATGTGGAATGttactgtttttcacaaatttctAACAGGATTCACAGGCAAAACACAGACTGTGAAACAATCcacaatttgtcttttttaaataatagtatatGTTAACCTTATATCTGCTGTGCTATTTTTTTCCAATGATTCTGGGAGTTTGGtagcatatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaacaaaatccagaaaaacgcatttcaaaaaagttatacattgatttgcatgttaatgagggaaataagtatttgatcccctatcaatcagcaagatttctggctctcaggtgtcttttatacaggtaacgagctgagattagcagcactctcttaaagggagtgctcctaatctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcaatcacattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtggagctacacaaggctggaatgggctaaaAGACCAttgccaagcagcttggtgagaaaatggcaacagttggtgcgattattcgcaaatggaagaaacacaaaataac

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020408 False 450 mRNA 0.61 3 18060125 18065789
TU78775 True 2078 TUCP 0.42 2 18058558 18061864

Neighbor

gene id symbol gene type direction distance location
AMCG00020395 cnot1 coding upstream 78007 17956708 ~ 17980551 (+)
AMCG00020396 NA coding upstream 108499 17945158 ~ 17950059 (+)
AMCG00020394 slc38a7,LOC107707914,LOC107711584,LOC107596460 coding upstream 116722 17930929 ~ 17941836 (+)
AMCG00020393 got2,got2a,LOC107694944,LOC107596935,LOC107738675,LOC107672286,LOC107726360,LOC107707915 coding upstream 132142 17917969 ~ 17926416 (+)
AMCG00020399 NA coding upstream 146418 17905597 ~ 17912140 (+)
AMCG00020406 e2f4,LOC106573204 coding downstream 53924 18119713 ~ 18134812 (+)
AMCG00020405 elmo3,LOC106561448,LOC105018213,LOC107732817,LOC107665726 coding downstream 73098 18138887 ~ 18178120 (+)
AMCG00020412 LOC107707912 coding downstream 116287 18182076 ~ 18186048 (+)
AMCG00020413 LOC107596504,LOC108411466,LOC107753522 coding downstream 121410 18187199 ~ 18195630 (+)
AMCG00020415 NA coding downstream 272648 18338437 ~ 18358845 (+)
G62916 NA non-coding upstream 26419 17987848 ~ 18032139 (+)
G62912 NA non-coding upstream 75037 17981033 ~ 17983521 (+)
G62909 NA non-coding upstream 103284 17954323 ~ 17955274 (+)
G62781 NA non-coding upstream 555295 17404385 ~ 17503263 (+)
G62681 nudt21 non-coding upstream 1012408 17030193 ~ 17046150 (+)
G62975 NA non-coding downstream 69204 18134993 ~ 18138267 (+)
G62989 NA non-coding downstream 131790 18197579 ~ 18200808 (+)
G62990 kifc3,LOC107670565 non-coding downstream 136055 18201844 ~ 18202070 (+)
G62991 NA non-coding downstream 139171 18204960 ~ 18205970 (+)
G62992 NA non-coding downstream 142622 18208411 ~ 18208650 (+)
G62895 NA other upstream 129654 17928328 ~ 17928904 (+)
AMCG00020371 nutf2 other upstream 586689 17459144 ~ 17471869 (+)
AMCG00020370 NA other upstream 615847 17433642 ~ 17442711 (+)
G62632 NA other upstream 1242701 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 1453900 16582886 ~ 16604658 (+)
AMCG00020407 NA other downstream 1998 18067787 ~ 18072051 (+)
G63045 NA other downstream 266780 18332569 ~ 18334032 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 1531414 19597203 ~ 19602324 (+)
AMCG00020438 NA other downstream 1565536 19631325 ~ 19636221 (+)
AMCG00020470 NA other downstream 4069579 22135368 ~ 22142198 (+)

Expression


Co-expression Network