AMCG00020409


Basic Information

Item Value
gene id AMCG00020409
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18171620 ~ 18175979 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020409
GTTATATTCTGTGtgcatttcttaattgaacAGGTTATAACTTACATCCTGAGTTTCCTGCAAGTGTCTGACAGGAAGGAAGCGTCCCTGGTCTGTAAGAGCTGGTACTATGCATGTCAGGACTACCAGTTTCAGAAGAATCTCACCTACAAGTTCCCAGCCTCCGCCTCTTGCTTGGACATGATCCAGGGGCTGGGACGGCGGTCGTGCACTGAGGTAGTCATCAGCCATCTGGATGCTTCATCCCTCTCCAAGACTGTGCTCAGGCAGGTGGCGCTGCATTTGGGCCCACAGCTCGAGAGCCTGTCCTTGCCAGGCAGCAGCATCACTGAGTCCTCTTTCCTGGCTCTGGTCCCCCGGCTCAGTGTGCTGCGGCGGCTAGACCTCAGCGGCCTGGATAGCCTGTTCATGTCAGGCACCTTCCTGTCCAAGGAGGAGAGCAGGCAGGAGGTGCGGAAGGCCCTGGGaaagctggaggagctggacctATCCTACCTGCGCTACCTGTCTGACCTCACCTTCAACCGGCTCACAAGCTGCACCCCCCAGCTGCACAGGCTGGGTCTGGCTGGCTGTCACATCGCCTTTGAGTTCGACCCCTACAGGGACACCCCGGCTAGCTGCAACTCCTCTGCGCTCATCTCCCTGAGGAACCTGCTCAGGTTCCTTAACCAGCAGGCCCACACCTTACGAGGACTGGACCTGGGCCGCACAAGCATCACCCCCGAGGCCCTGAAGTCACTGGCTCAGGTGGAGGGTCTCATTTTGGAGGAGCTGAGCCTGCAGGGCTGCAAGGAGCTAACTGACACCGCCATCGCTGTCCTCTGCAAACACCAGCCACGTCTGAGGAGCCTGGACCTCAGCTGGTGTACCGAGCTTTCCGACAGGACGGTGCTGGCCATTGCCTCCAGTTTGAAGGACCTCCAGCACCTTCACCTGAGGAGGACCTGGAGGATCACAGACAAGGGCCTGTCAGAACTCATGAAGCTCCGGGACTTACAGACCCTGGACCTCTCAGAGTGCAACCACATCACAGGCAGCGAGATGGTCAAAGGCCTTTCCTCTGTAGGAGGTCAGGCCAAGCTGGTGTCTCTCAGCTTCCAGAGCTGCACCTATGTGCGAGATCTGGCAATGTTCTCACTGGTCCAGGGGCTGGGCCCCAGCTTGCGTGTGTTGGACCTCACTTCCTGTCTGTACCTGACTGACTTGAGCGTGCGTGCCATTGCTACTTTCCTGCCTGGCCTGCTGGTGCTGCGGCTAGGCTGGTGCAAGGAGGTGACTGACTGGGGGCTGCTGGGAATTGTGGAGCCCACCAAGGAGTATGACCCTGACAGGCaaaagGAAGACAAAGGGCCCAAGTTCAGCCGCACTTTTGGCAACATGGGCTTCTTTAGTCCTCCCCGGATGCCCTTTGATGACAAGCCCCGCTTGGTGACGGAGGAGGACCTGGGCCAATTCAGGGAGAAAGAGGGGGCATCACTGCGGGCCCTTAGAGGACTCCAGGAGCTGGACCTCTCCGCTTGTAACAAGCTGACAGACAGCAGCATCACCCAGGTGGTGCATTTCCCAGAGCTACGCAGGCTGTCGCTGTCCATGCTGAGCGAGATCAGCGACCAGAGCCTGGTGTCACTGTCCCAGCACTGTCGTGGTCTCACCAGCCTGTCCCTCAGCCACTGTGTTCAGGTCAGCGACCAGGGCCTGGCCAGCGCTGCCCCTCGGCTCCACAGGTTGGAGAACCTGCAGCTGGCCTGCTGTGACCGCATCAGTGACAGGTCTCTGGATGTTCTGGCCCAGCACTGCAGGAAACTGAGGACACTGGACCTGTCCATGTGCAAAAACATCACCATGACAGCTGTAGAGTCCCTCCAATCACAGCTGCCCTTCCTGGAGAACATCCACACCCGATTTGTGGGCAGGGCCGACCTGTGCTTCACTATATGA

Function

GO: NA

KEGG:

id description
K10275 FBXL9, LRRC29; F-box and leucine-rich repeat protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020409 True 1941 mRNA 0.58 6 18171620 18175979

Neighbor

gene id symbol gene type direction distance location
AMCG00020410 NA coding downstream 61438 18104188 ~ 18110182 (-)
AMCG00020411 NA coding downstream 79116 18089099 ~ 18092504 (-)
AMCG00020404 NA coding downstream 92469 18071296 ~ 18079151 (-)
AMCG00020401 NA coding downstream 115691 18050833 ~ 18055929 (-)
AMCG00020402 NA coding downstream 131634 18029373 ~ 18039986 (-)
AMCG00020414 NA coding upstream 19761 18195740 ~ 18225630 (-)
AMCG00020417 NA coding upstream 59660 18235639 ~ 18247655 (-)
AMCG00020418 NA coding upstream 71678 18247657 ~ 18291605 (-)
AMCG00020416 NA coding upstream 138692 18314671 ~ 18334032 (-)
AMCG00020422 NA coding upstream 214827 18390806 ~ 18395296 (-)
G62981 NA non-coding downstream 33322 18137480 ~ 18138298 (-)
G62951 cnot1 non-coding downstream 201929 17968233 ~ 17969691 (-)
G62880 NA non-coding downstream 320507 17848158 ~ 17851113 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding downstream 801174 17364823 ~ 17370446 (-)
G62715 NA non-coding downstream 995785 17120154 ~ 17175835 (-)
G63015 NA non-coding upstream 8029 18184008 ~ 18186050 (-)
G63057 NA non-coding upstream 181846 18357825 ~ 18358910 (-)
G63092 NA non-coding upstream 221488 18397467 ~ 18398731 (-)
G63096 NA non-coding upstream 260546 18436525 ~ 18436939 (-)
G63180 NA non-coding upstream 901498 19077477 ~ 19077758 (-)
G62961 NA other downstream 131660 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 155758 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 545431 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 1353853 16794996 ~ 16817767 (-)
G62618 NA other downstream 1378453 16792866 ~ 16793167 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 2112591 20288570 ~ 20299843 (-)
G63464 NA other upstream 3136223 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 3954863 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 4264813 22440792 ~ 22466767 (-)
G63679 NA other upstream 4367863 22543842 ~ 22544689 (-)

Expression


Co-expression Network