AMCG00020412 (LOC107707912)


Basic Information

Item Value
gene id AMCG00020412
gene name LOC107707912
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18182076 ~ 18186048 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020412
TGGCAAGGCGTGCGCGGCGCACTGTGATGACGCGGTGTGCGCCGGAAGTGTCCCGGTGAATGCTGATGTGTTCAATCTAGAGGAAGCTTTAATATCCAGCAGTTCGGTAACATTTGAtagagcttttaaaaaaaagacacagtGAAAGTAGATGTCAACGGGGCGACATTATTTACAAGCTGGTGGTACAATAATACGGGTCGAATCGTTTACACTATGGCGCCTAAAGGCAAGGTTGGCACTAAAGGCAAAAAGCAGATCTATGAAGAGAATACTGCCACGCTGAAGTTCTACACCAGGGTAATTCTAGGAGCTAATACGTTGCTGGTGTTTGCCCTGGCAGTTTACGGAGCCAGCTATCGGTCTATGTCTGCGATGGCGAAACCTACGTTCACACCAGATGGTGCCCTACTGGATGGGGGCATAGACCTCAACATGGAGCAGGGAATGGCAGAGCACCTGAAGGATGTGATTTTACTAACGGCTATCGTCCAGGTGGTCAGCACAATATCCATGTACTTCTGGTATCTTTGGCTCTTGgcACCAACGAGGGCAATCTACCTGCTGTGGGTGAATTTCCTGGGCCCCTGGTTCACAGCCGAGACCCCCACTGCCAACGAGGAAGTGAACGACAAGAAGCAGAGGAGACAGGAACGACGACAAATGAAAAGATTCTAATTTtggattatgatttttttttttttatataaatgcatctatatatgtgtgtagatgttgcagtttgttttaaattattcagcacgaggttttgtttttctgagttTACAGAAACCCAAATCATGAACTTTGCAACATTTGTTGTCAGTGTCTGTTTAACTCTGAGGTTTCATACTATGTAAGACCTTCCTCTGCACCTGTGAAGGTGTCCTACTACTTTCATACAGACAGTGTTGGACGCTGCTGTGGTTTTAACAAACAATCAGACAACTTAACTGTTATGAAAACGTATATTGAAACAGTTGTACAATCCAGGGAAGCTAATTAAATCATGTTTCCAATATCTCATGCATCATCTTTACTCAAGGTAGCTTTTGTAGATAAAGCTaatccatttcaaaatattgaattacttGAACTCTGTATAGCACCCTATGAAAGCTGTTCCTCCTGACTTTAATGCCTGCTGCTTGTCTTGCCGGTCTCCTTCACTTTTATCACTGTGCCTGAGTGAACCAGAGCAATGtgtatcaatttaaaaacactgaatctatagaaataagaaatataatttttaagaaAGAGAGGAAATATCAAGAAATATTACAGACGAACAAGCCTGTTCTTGGTACACAGGGCTAGATTAAATGCCACTGTTCATTATCACTACAAACACAAGGTATTTTCAATGTGACTAATCTGTATGAATCCAGACTAATGATCATGGCTTTCAATCGGTGGACTCAGTGGATGTGCAGTATTTACTTCTTCACTGATTCTCCATGTTGACAAATGTGTTGCCAGTACCTTGAGAACCCCTTGTCTTATTAATTatccaaataaatgtatcttgatattaataattataataataaacttgagttttaacattgatttttaaTGTTGAATGTTAACCTTTCAGAATATGTGGATTATAGTGCTTTAAAACACTATTTAGGACTATAGCTAAATGAGTAGGTGAAAAAAATGGGGGAAAAGCAAACTGGTGGCAGCTGCATcagtgtacatttatttttcttttaaatgcatgcattaccCATGAAATGATGTGCAGCAGTATCTATGAATGTCTTAAATTATACTTCACTCAGAGTCTTTATCATAAGATCAGAGGTTGACTTAACAGACAAAATGATTGTTCATGATCACTCACGTGtcacaaatactttttttttggtaatatgAATCCTCTACTCCATAGTGATATTTAATTAAGGCTGTATATTACAAATCTGCCTGTTGTATGAATCTATCAGGAAATATTGTTTGCCCAATGTTACTGAGCTTTGCTGTTCTCAGTTGTATAAGGTCTGTGCCTCTTTTTCTGCAGATTTCACTCACAGGATCTGGAACAAAAGGAATTGCATGTGTAATGTGGGTCTTCCTCAACACTACCTTCTCACATGTAATGTCTTAATGTAAATAGGAAATAaactatttcatttaaaaa

Function

NR:

description
PREDICTED: transmembrane protein 208-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020412 True 2149 mRNA 0.39 5 18182076 18186048

Neighbor

gene id symbol gene type direction distance location
AMCG00020405 elmo3,LOC106561448,LOC105018213,LOC107732817,LOC107665726 coding upstream 3956 18138887 ~ 18178120 (+)
AMCG00020406 e2f4,LOC106573204 coding upstream 47264 18119713 ~ 18134812 (+)
AMCG00020395 cnot1 coding upstream 201525 17956708 ~ 17980551 (+)
AMCG00020396 NA coding upstream 232017 17945158 ~ 17950059 (+)
AMCG00020394 slc38a7,LOC107707914,LOC107711584,LOC107596460 coding upstream 240240 17930929 ~ 17941836 (+)
AMCG00020413 LOC107596504,LOC108411466,LOC107753522 coding downstream 1151 18187199 ~ 18195630 (+)
AMCG00020415 NA coding downstream 152389 18338437 ~ 18358845 (+)
AMCG00020420 NA coding downstream 196095 18382143 ~ 18389911 (+)
AMCG00020419 NA coding downstream 209809 18395857 ~ 18398731 (+)
AMCG00020425 ccdc102a,LOC106562045,LOC107594240,LOC107081377,LOC103376291 coding downstream 324415 18510463 ~ 18522856 (+)
G62975 NA non-coding upstream 43809 18134993 ~ 18138267 (+)
G62916 NA non-coding upstream 149937 17987848 ~ 18032139 (+)
G62912 NA non-coding upstream 198555 17981033 ~ 17983521 (+)
G62909 NA non-coding upstream 226802 17954323 ~ 17955274 (+)
G62781 NA non-coding upstream 678813 17404385 ~ 17503263 (+)
G62989 NA non-coding downstream 11531 18197579 ~ 18200808 (+)
G62990 kifc3,LOC107670565 non-coding downstream 15796 18201844 ~ 18202070 (+)
G62991 NA non-coding downstream 18912 18204960 ~ 18205970 (+)
G62992 NA non-coding downstream 22363 18208411 ~ 18208650 (+)
G62993 NA non-coding downstream 24090 18210138 ~ 18210377 (+)
AMCG00020407 NA other upstream 110025 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 116287 18058558 ~ 18065789 (+)
G62895 NA other upstream 253172 17928328 ~ 17928904 (+)
AMCG00020371 nutf2 other upstream 710207 17459144 ~ 17471869 (+)
AMCG00020370 NA other upstream 739365 17433642 ~ 17442711 (+)
G63045 NA other downstream 146521 18332569 ~ 18334032 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 1411155 19597203 ~ 19602324 (+)
AMCG00020438 NA other downstream 1445277 19631325 ~ 19636221 (+)
AMCG00020470 NA other downstream 3949320 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 4170126 22356174 ~ 22409493 (+)

Expression


Co-expression Network