AMCG00020415


Basic Information

Item Value
gene id AMCG00020415
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18338437 ~ 18358845 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020415
CTGACTGCTTCCTCCAGGCTGCTTTTGTCACAGTTTACACGAGGGCATTCAGTGACAGTGCTAGTGTCACAgaatttttttcttcagatccCATGCTGCTTTCTGCCTCCATTTGAAGGATGAATCCCTTCCTCCTCACTACCAGGCTCATTAGTACTTCACTCCTTCTGGTGGTCAAGATGAGTGACTGTGATCGATACGTTTGCCAAGAACAAGTCCAGGGACAGATAAGCACAATCAAGGTGAACCTGCCGAAAGAAATTGTATCAAAGAATGATGAGAACAAGATGATTGCTTACTGCGCCTACAGGGACcctgatttttttaatCCTTTAGAAGCTCTTAACAACGAAACGGTTGGTTTGAGTGTCAGCAACACAACTGTCTCTGGGCTGAGAAATCCTGTCAATATCACATTCAGATTTGAGGAGGCCCTTAAGGTCCCTAAATCTAATATCCGTCTGCCAGATGTTGTGTCCTTGACTTACATCACACAGGTGGGCTGCTCCCTGTCCTTGGTGTTCCTGACCATTACCTTCATCCTGTACTTCATCAACAGttgctttgtaaataatgtcGTTGTGAGGAATGTGACAATCCTGAGTTTGGTGTTCCTGGTGTGTCTGTTTAACCTGGTCATGCTGAGCATCACGGTGAAGAAGATAATGTCCATGAGGTCCAACAAGGTCTCCGGGGAGAATCGCAGTGCCTGTCAGGATGTAGGCACTGTGCTGGGCATCACCTTCCTACTGGGCACAACCTGGGGCCTGGCCTTCTTCTCATTTGGGCCCCTGGAGCTAACAGGCATCTATCTCTTCACCATCCTCAATTCACTACAAGgtttttttatttttctgaggtACTTCCTTTCGAAGCAGAGAGCCAGTCGAGGTTCCGCCACCATGGCCACCCAAAGCTCGGGGACCTGACAGGATCTTATGGCTTGGCAACCTGGCTCAGCGATTCTTCCCCGGCTTCTTCTAGGCTGTGGGTCAGGCTTGTCCCCCTGCCCCATGACAATGTTTCTTACtgcaattgaaaatgaaaatgaaaatttgaATTGCAAGGGTTTGATGTACAGTTACAATTTAAGTTTAGTACTATTAttttagtagtagcagtagtagtagtagcaataTTGTTTATACATTGAGCATTtcagtattattgtattaaaataagacaTCTTATTGGTGGGCTGGGGCAGATACCttctatttgttgtttttagatttaataaactaaaattTAACTATTTCTATTCACAACTATTGTGACAGATGTACTTTTGTGGTCTACACacctgtaaacaaacaaacaagcaagcagaTACATAATTGCattgttcaataaataaacattgtt

Function

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0002376 immune system process biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04658 Th1 and Th2 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020415 True 1365 mRNA 0.43 7 18338437 18358845

Neighbor

gene id symbol gene type direction distance location
AMCG00020413 LOC107596504,LOC108411466,LOC107753522 coding upstream 142807 18187199 ~ 18195630 (+)
AMCG00020412 LOC107707912 coding upstream 152389 18182076 ~ 18186048 (+)
AMCG00020405 elmo3,LOC106561448,LOC105018213,LOC107732817,LOC107665726 coding upstream 160317 18138887 ~ 18178120 (+)
AMCG00020406 e2f4,LOC106573204 coding upstream 203625 18119713 ~ 18134812 (+)
AMCG00020395 cnot1 coding upstream 357886 17956708 ~ 17980551 (+)
AMCG00020420 NA coding downstream 23298 18382143 ~ 18389911 (+)
AMCG00020419 NA coding downstream 37012 18395857 ~ 18398731 (+)
AMCG00020425 ccdc102a,LOC106562045,LOC107594240,LOC107081377,LOC103376291 coding downstream 151618 18510463 ~ 18522856 (+)
AMCG00020426 ccdc102a,LOC106587147,LOC106562045,LOC107674431,LOC107754670 coding downstream 171333 18530178 ~ 18536093 (+)
AMCG00020427 LOC106562068,LOC107585958,LOC106903279,LOC106941941 coding downstream 250924 18609769 ~ 18617672 (+)
G62994 NA non-coding upstream 127408 18210769 ~ 18211029 (+)
G62993 NA non-coding upstream 128060 18210138 ~ 18210377 (+)
G62992 NA non-coding upstream 129787 18208411 ~ 18208650 (+)
G62991 NA non-coding upstream 132467 18204960 ~ 18205970 (+)
G62990 kifc3,LOC107670565 non-coding upstream 136367 18201844 ~ 18202070 (+)
G63058 NA non-coding downstream 1430 18360275 ~ 18360493 (+)
G63068 NA non-coding downstream 34221 18393066 ~ 18393306 (+)
G63069 NA non-coding downstream 35256 18394101 ~ 18394306 (+)
G63097 NA non-coding downstream 79357 18438202 ~ 18440919 (+)
G63203 LOC101154678 non-coding downstream 924113 19282958 ~ 19283173 (+)
G63045 NA other upstream 4405 18332569 ~ 18334032 (+)
AMCG00020407 NA other upstream 266386 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 272648 18058558 ~ 18065789 (+)
G62895 NA other upstream 409533 17928328 ~ 17928904 (+)
AMCG00020371 nutf2 other upstream 866568 17459144 ~ 17471869 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 1238358 19597203 ~ 19602324 (+)
AMCG00020438 NA other downstream 1272480 19631325 ~ 19636221 (+)
AMCG00020470 NA other downstream 3776523 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 3997329 22356174 ~ 22409493 (+)
AMCG00020505 NA other downstream 4694953 23053798 ~ 23062149 (+)

Expression


Co-expression Network