AMCG00020416


Basic Information

Item Value
gene id AMCG00020416
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18314671 ~ 18334032 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020416
CACAACCCAAGAGCTCACTTGGAGTCGGCAAGCCAACAGCGCGTCTGTCTGCCTGAAAGAGTATTAACATCAGCCCGGGGGAGCTCCAAAAAGCAGCGCACACAAGTGAATACAGTCCTGGAAAATTGAAAGAAAACCTGGATTTTAAcgggcaagaaaaaaaaaacacacaccatcACATTAAATCTTTATAAGCGAGGCTGCAATACAAAGGCAGGCGTCATTATTCTGGCAACCGGGGACGTTGTGAGAGCTTTCTGTTAATGTTGTGGACTCTTCTTTGAATGGACACACGACCGTATCTGCTCAACGCTTCCACCAGTTCTCTAGTTACTGTCATTTCAGCCGTCGTGTTGTGTTGTTTCCCGTTGGCCACCTTTATTATACCGTAGGTACAGTAATTGCTAGGCTAATTTCTTTATTTGCGGCGTGACATTTCTGCAAATGAGTATAATAAAACGAAGCAACTCATTTGTCTCGGGGCAAGAGTGTTGATTGCCTAAAACAGTTGCTAAAttagattattatatatttcttttgtttgttgggGGCTTCTATAATTGTAACGTGGGTCATTGGGAAGGGTGCAATCAACCTGGTGCTTCATTGGTTTTCAGATCAGCACTGGCAGGGAAATTGCCAATAAAGATCTGGCACAACGCGCTGGCTTTTCAGCCCTTCTCCTAGAAAAGCTGGGCTAGGGTACAGCGGCTCACTGGGCTATTTTGGAGCTCTCTCCTGGGACTCATGTAGGACTGGACCTGAATACAGAAACAAGAGGGAGGTCAGGAACAAAAAAGCAAGGGAACAAAAACAGAGATGCCTATACCAGGAGCTCCCAAAAAGGAAAAGTGCATGTTTACAATttgacaaagcaaaacaaacaaacaaacaaacaaacaagaaatccCAGTCTCTGCGCTCGCCAGAAATACTATGAAGACTGATTAGGGGAATGACCTGCAGTTGTAGGCGCTTTTGATTCAGCCCCAGTACAGCGCGCTTTCCTCCAGTGTGTATTTCGGGAAAGGGAACTTAAACCGTGATTTCGTGAATGCAAAAACAAGTCCATCCTTAGCGACACGCACGGAGCACGCACGCACGCAGGCACGCACGCAGCCGGACCCGCACAGCGCCGCAGACCCGCACAGCCAGCGCGCGACGGGATGGGACCCTCGAGGACGTGCGGGACCGCGTCGCCCTGGAAACTGAATCTCGTGCCGTTGCTGGTGGTCCTGGTCTGCAGCGGCGGGGCGTGCGGGGCTGGGGACCACGCGTTCAACTCTGAGTCATGGCTACGGATGTATGGCTACCTCCCTCCAGCCAGCAAATTGATGTCCACGATGAGTGCGATGAAAAAGCCCCGGTGTGGTGTCCCTGACAAATTCGGAGGCCAAATCAAAACGAATGTCCGTAGAAAGCGCTTTGCCCTGACAGGACACAGATGGAATAAAAGTCAACTGACCTTCAGCATCCAGAACTACACCCCGAAGATTGGCGAATACGATTCATACAAGGCAATCCGGAAAGCCTTCCAGGTGTGGCAGAGCGTGACACCGCTGCAATTCGAGGAGATCCCGTACCACGAGGTCAAGTACGGCCGTCGCAAGGAGCCCGACATCATGATCTTTTTTGCCTCCGGTTTCCATGGCGACAGCTCCCCTTTTGATGGCGAGGGGGGATTCCTGGCCCACGCCTACTTCCCAGGACCTGGCATGGGGGGGGACACGCACTTCGACTCAGACGAGCCCTGGACCATCGGCAATGGTGACCTTAGCGGAAATGACCTGTTTCTGGTGGCTGTTCATGAGCTGGGCCACGCACTGGGGCTGGAGCACTCCAACAACCCCATGGCTATCATGGCCCCATTCTACCAGTGGATGGACACAGAGAACTTCCAGCTGCCAGAGGATGACCTCAGAGGGGTCCAGCAGATCTATGATCCAGGCAAACCCCGCACCACTGATCGCCCCGACCACTATGGCCCCAACATCTGCGATGGCAATTTCGACACTGTCACCGTTCTGAGAGGAGAGATGTTTGTCTTTAAGGGGCGCTGGTTTTGGAGGGTCCGTCGTAACCGAGTTCTGGACAACTACCCCATGCCTATTGGACACTTCTGGAGAGGGCTTCCTGGAGACATTGATGCTGCCTATGAAAGGCATGATGGGAAATTTGTCTTTTTCAAAGGAAGCAAGTTCTGGCTGTATCGGGAGGCTAATCTGGAACCAGGCTACCCACAGGAGCTGACAGAGTATGGTCAGGGCATCCCATATGACAAGATAGAGACAGCTATTTGGTGGGAACCTACAGGATACACTTATTTCTTTAATGGAGACAgGTACTGGCGTTTTAATGAGCAATCTCGTGCTGTGGACAAGGACTATCCCAAGCCAAACAGCGTGTGGGGCGGGATCCCTCCCTCTCCCAAGGGGGCTTTCCTGAGTGATGATGGAGCTTATACCTATTTCTACAAAGGAACCAAGTACTGGAAATTTGACAATCAGAGGATGAAGATTGAGCCTGGATATCCCAAATCTATCTTGCGGGACTTCATGGGCTGCCAAGTCAACCTTGACCCAGACCAAGACACCGACAAGGACGTGGGCCGCAAGTGGCCAGAGGTGGACCGTCCACCGTTCGACCCTGATGCAGGGCGAGACGGCACCAACGACGTGGATTACAAGGATGAGGACGTGGACGTTGTGCTTAAAATTGACGAATACACTCGTACCATGAACATCATCATGGTAACCGTGCCTCTGATCCTGGTGCTGTGCATTCTGGGACTGATTTACGCCATCATCAAGATGCAGAGGAAAGGGGCGCCTAAGGTGCTGGTCCACTGCAAACGTTCCCTGCAGGACTGGGTTTGACTTTTCACCTTTGACCCCTTCCCCCTCTCacctcacaaacacacacattacccGACATGTCCCTTCCCATGGTGCTACCAATTAGTTGACTGTAGTCTATTTATATCAGAAagtttgcacatttttttttttttttgtgatt

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
K07995 MMP15; matrix metalloproteinase-15 (membrane-inserted)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020416 True 3018 mRNA 0.51 10 18314671 18334032

Neighbor

gene id symbol gene type direction distance location
AMCG00020418 NA coding downstream 23066 18247657 ~ 18291605 (-)
AMCG00020417 NA coding downstream 67016 18235639 ~ 18247655 (-)
AMCG00020414 NA coding downstream 89041 18195740 ~ 18225630 (-)
AMCG00020409 NA coding downstream 138692 18171620 ~ 18175979 (-)
AMCG00020410 NA coding downstream 204489 18104188 ~ 18110182 (-)
AMCG00020422 NA coding upstream 56774 18390806 ~ 18395296 (-)
AMCG00020424 NA coding upstream 64802 18398834 ~ 18415770 (-)
AMCG00020421 NA coding upstream 85150 18419182 ~ 18431255 (-)
AMCG00020423 NA coding upstream 104172 18438204 ~ 18454657 (-)
AMCG00020434 NA coding upstream 540870 18874902 ~ 18901561 (-)
G63015 NA non-coding downstream 128621 18184008 ~ 18186050 (-)
G62981 NA non-coding downstream 176373 18137480 ~ 18138298 (-)
G62951 cnot1 non-coding downstream 344980 17968233 ~ 17969691 (-)
G62880 NA non-coding downstream 463558 17848158 ~ 17851113 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding downstream 944225 17364823 ~ 17370446 (-)
G63057 NA non-coding upstream 23793 18357825 ~ 18358910 (-)
G63092 NA non-coding upstream 63435 18397467 ~ 18398731 (-)
G63096 NA non-coding upstream 102493 18436525 ~ 18436939 (-)
G63180 NA non-coding upstream 743445 19077477 ~ 19077758 (-)
G63257 NA non-coding upstream 1300262 19634294 ~ 19636243 (-)
G62961 NA other downstream 274711 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 298809 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 688482 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 1496904 16794996 ~ 16817767 (-)
G62618 NA other downstream 1521504 16792866 ~ 16793167 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 1954538 20288570 ~ 20299843 (-)
G63464 NA other upstream 2978170 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 3796810 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 4106760 22440792 ~ 22466767 (-)
G63679 NA other upstream 4209810 22543842 ~ 22544689 (-)

Expression


Co-expression Network