AMCG00020417


Basic Information

Item Value
gene id AMCG00020417
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18235639 ~ 18247655 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020417
ATGCCTAAGCAGCAGAACCCAGACCTGGAGTTAGACCACCTAGTCCGTGATGCACCCCTGCCCCCTGAGAATCTCCCCTCCCCTACCTCCTCCAGCAGCGCGCTAGAGCTCCCCAATGTTCCCAGCTATTCCCGCCTGCCCCCCATCGGGCTCAACAGACAACTGTCAGGGCTCTCCAACCCCGGCTTCAGCACCAAGGAGGGCGAACCCCACACCCCGCCCCCAGAAGGTTCCAGAGTGAATGTACACCCTGCTGTCAATGTGGAAGATGTGGATTCAGACAAAGATTCCAGCGACAGTCCCAGGAAACTGCCTCTCGTCCTGCCCCCTCAGTCCCCCTACACCAGCAAGACCCTAACTGTGCCAGGGGTGTCTGTGGCATCCCGGAGAAAGAAGCTGTACAACCAGGAGGACAGTGTGGAGGAGACTGAGACCACAGTCAGGGCCTGGCCCAGTCAGAGCAGTCTGCTTATGGAGGATGGggggagagagaggccGGCCTCAGTCACCAGCCAGACCAGCGCCATTGTGAATGAACGGCTGCAGGAGCTTGTGAAGATGTTTAAGGCACGGACAGAGCGAGTGAAGGAGAAGCTCGTCGACCCAGATGACTCTGATGAAGAGAGCGCCACCTCCTCCCCAGTAAAGAAAGCcgcaccccctccccctccccctccccctcccccagagGAGAAAGCGGAGCCTgagaagaaagaggaggaggagcactACTGCGACATGCTGTGCTGCAAGTTCAAAACCATGCCCTGGATGAGGCAGCTGAAGCGGTACCACTTCCCAAAGAGCATCGACCCCTTCACCAATCTGATCTACGTGCTGTGGCTGTTCTTCGTCACCCTGGCTTGGAACTGGAATGTGTGGCTGATCCCGGTGCGCTGGGCCTTCCCCTACCAGACCCCTGACAACATTCACCTCTGGCTGCTCACTGACTACCTGTGTGACACCATCTACATCCTGGACATCCTGGTCTTTCAGCCCCGTCTGCAGTTTGTCCGAGGCGGGGACATCGTGtgcGACAAAAAGGATATGAGAGAAAACTATATGAAAACTCTGCGCTTCAAGTACATGTCTTTCTTTGAATTCAATGAACGTCTGGAAGCAATCCTGAGCAAAGCCTACATCTACAGAGTCATCAGAACAACAGCTTACCTGCTCTACTCCCTACACTGCAACTCCTGCCTCTTCTACTGGGCGTCTGACTATGAAGGACTCGGTTCCACAAAATGGGTGTATGATGGCATCGGCAACAGTTATATCCGCTGCTACTACTTTGCAGTGAAGACCCTCATCACCATTGGGGGGCTGCCAGACCCTACCACCCTGTTCGAAATTATCTTCCAGCTGGTCAACTACTTTGTGGGAGTCTTTGCCTTCTCCATCATGATCGGGCAGATGAGAGATGTTGTGGGAGCCGCCACTGCGGGCCAGACATACTACCGGGCCTGCATGGATAGCACCATCAAGTACATGACTTCCTATCGCATCCCCCGCGACGTCCAGAACCGAGTTAAGACCTGGTACGACTATACCTGGCAGTCTCAGGGCATGTTGGATGAGCAGGAGTTGCTGGTCCAGCTCCCAGATAAGATGAGACTTGACATTGCTGTGGATGTCAATTACTCCATTGTCAGCAAGGTGGCACTCTTTGAAGGCTGTGATAGACAGATGATTTATGACATGCTGAAGAGGCTGAAATCTGTGGTGTACCTGCCAGGGGATTACGTCTGTAAAAAGGGGGAGATAGGGCGGGAGATGTACATTATTAAGGCTGGGGAGGTTCAGGTGCTGGGCGGTCCTGACGGGAAGACTGTCTTTGTGACGCTGCGAGCTGGGTCTGTCTTTGGGGAAATCAGCCTTCTGGCCGTGGGAGGAGGGAACCGACGCACAGCCAACGTGGTGGCTCACGGGTTTGCCAACCTCTTCATTCTGGACAAGAAGGACCTGTCTGAGATCCTGGTGCACTACCCCGAGTCCCAGAAACTGCTACGCAAGAAGGCCAAGTCAGTGCCAGGAACGGCGGGAGGCAGCCTTTTCTCACATAGCGCTTTTTATCACAGCTTAGGATCCCTGACTGGGACACCCAAGCTGTTCCAGGCAGCCCTGCAGGCCACAGAGAAGTCGGGCATGAAGGGAACCTTCTCCACACTGAAGCAGATGGCGCACACGTCCAGCTCAGATGAGgtGCTGTTGTGTTTACAGAAGCCCATTGCATTTGTGCACCGCCGTTCCCCAGTCCCACGTGAGCTGccggaggaggacgaggaggaggatgTGGTGTCTGAGGCCTCTGACAGCTCCATGCTAATCCGCATGACCCCCGCCCATGACGGCCATGAAGAGCTCCTGTCCGTAGAGATGCCCCatacagaggaggaggagcccaAGGAGTAA

Function

GO: NA

KEGG:

id description
K04952 CNGB1; cyclic nucleotide gated channel beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020417 True 2412 mRNA 0.56 18 18235639 18247655

Neighbor

gene id symbol gene type direction distance location
AMCG00020414 NA coding downstream 10009 18195740 ~ 18225630 (-)
AMCG00020409 NA coding downstream 59660 18171620 ~ 18175979 (-)
AMCG00020410 NA coding downstream 125457 18104188 ~ 18110182 (-)
AMCG00020411 NA coding downstream 143135 18089099 ~ 18092504 (-)
AMCG00020404 NA coding downstream 156488 18071296 ~ 18079151 (-)
AMCG00020418 NA coding upstream 2 18247657 ~ 18291605 (-)
AMCG00020416 NA coding upstream 67016 18314671 ~ 18334032 (-)
AMCG00020422 NA coding upstream 143151 18390806 ~ 18395296 (-)
AMCG00020424 NA coding upstream 151179 18398834 ~ 18415770 (-)
AMCG00020421 NA coding upstream 171527 18419182 ~ 18431255 (-)
G63015 NA non-coding downstream 49589 18184008 ~ 18186050 (-)
G62981 NA non-coding downstream 97341 18137480 ~ 18138298 (-)
G62951 cnot1 non-coding downstream 265948 17968233 ~ 17969691 (-)
G62880 NA non-coding downstream 384526 17848158 ~ 17851113 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding downstream 865193 17364823 ~ 17370446 (-)
G63057 NA non-coding upstream 110170 18357825 ~ 18358910 (-)
G63092 NA non-coding upstream 149812 18397467 ~ 18398731 (-)
G63096 NA non-coding upstream 188870 18436525 ~ 18436939 (-)
G63180 NA non-coding upstream 829822 19077477 ~ 19077758 (-)
G63257 NA non-coding upstream 1386639 19634294 ~ 19636243 (-)
G62961 NA other downstream 195679 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 219777 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 609450 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 1417872 16794996 ~ 16817767 (-)
G62618 NA other downstream 1442472 16792866 ~ 16793167 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 2040915 20288570 ~ 20299843 (-)
G63464 NA other upstream 3064547 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 3883187 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 4193137 22440792 ~ 22466767 (-)
G63679 NA other upstream 4296187 22543842 ~ 22544689 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110526930 LOC106561912 coding NC_048570.1 CM023224.2 55351729 ~ 55364742 (+)