AMCG00020418


Basic Information

Item Value
gene id AMCG00020418
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18247657 ~ 18291605 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020418
ATGCCCCGCGCTCCTCTGCTTGGGGGAAACAGCCAAACTTGGAGCACGTTCTGCATTTCCCCTGCCCTGGCGTGCTTCCACTCACCCCTGGCTCGAAAGCAGAAGAAAAGCTGCAGGACGCCCAGAGGAAATCCCCACCTGTTGCCCCACCTGATCCCCTCTGATCTGAGAAGATACCGCAATAACTTGCTTGGAGCCGACCGCACTTCGCCAGCAGCCACCCCCCACGAGTCCCCTGGCTGCTACATAAAGATGTTTAGCTGGGTGGTGAAAGTGGTTCCCCAGCCCCCTGAACCCCCTAAGCCCCTGGGACAGGAAGACCAGGCTGAGCCCACACCCCTTGCTTCAGAGCCAgaaaagaaagtgaaagtgaaagcgAAGGAAAAAGACCTTCCACCAAAGGAAGTGCCCAAGCCAGAGCCCGAAAAGTCAAAAGAGCTTCAAGAGACTGCAGAGGACAACAGtaccCAGTCTGGTGTGTTGACCTGGATCTCTCAGGGTTTTGTCAATGTCCTTCCCAAGCCAGTGGGGACCTCTGGGGATAAGAAGGAGGAGCTGAAAGCAGAAAGCAAGGTGAAGGAGATCGAAACGGCCTCTCAGGCTGCCAGGCAGGGAGGTGGAGTCATCAGCTGGTTTGTGCAGGGACTGGGCAAAGTCGTTCCCCAGCCAGAGGACAAATACAAAGCAGTTGCCCTGGAAGAAGATAACAAAACACAGGTGGGCAAAAAATCTCAAACCGAGATTAAAATAGTGGAGCTGGAATCCGTCAGCTCACAAGAACCCGCCTCCGAAATCGACAACACAGTCCAGAGCCACCCATTGGCCACTCCCAGTAAAGCCAGGGTGATTGAATGGCTGAAACATGGTCTGGAGAAAGTGGTTCCCAAGCCAGCAGAACTCCCTGCCCCTCTCAATACAGCTCCGCAAAACACGAAAgcagagaagaagaaggaagaagCCCCAAAGAAAGAAGTCGTGAAGGAGACTCCTGCTCCTGTTCCTGCTCCTAAAGcaccagcaccagcaccagcaccagcgtCTGCTGAGCCTGTGAGTGCCCGCGAGGAGGCCACCAAACCTGCCAGTATGGTGGGCTGGTTCGTGCAGGGACTGGAGAAGATGGTTCCACAGCCGGTGACAAAACCCAAAGCAGATGGGACAGGGgaGGAAGCAGGTGCATCTGTAGTGCAAGAAAAGCCAGTCGCTGTGGACATGATCTTGGAGGAAGTGGAGTCAGACTGGGAGAATGAGCCAGGGGCCCAGGCTGAGACTCTGGAGATGCTCCCTGCCCCACGGGAGCCCCCTTCCCACCCTCGGCTCCGCGCCGTGCTGCTGGAGGACGCAGAGACCCAGACAGAGCGCTGGACACCCATTCTACACCTGACTCCACCAGAGACAGACGGAGTCAGGCAAGATCCAAAGGCAGTCGAAGAGCCAGTGCAAGAAACAGCGGAGGAGCCACTTGAGGAAGTGACAGAAAACCTGGATGATGGAGAAGAGTTACGATTGATACAGGAAGAAAgtgaggaggcggaggaggaggagaataAGTTCACCGAGTGCCTTGTGGACGTGTGTCCTGCAGGGGGCTTCCCCAGCCCCCCCCCGCCTGAGTCAGTAGAGGAGGAGAAAGCTGCAGCAGGAGAACAGACCCACCCACAGCTGGGACCAGAGGCACGGGTGGAGGGGGATCCAGACGGAGGAGTGCAGAAGACAGGAGAGGTGAGCCCAGATCAAGGGCAGTCAGCAGTCAAAGAGGATTCACCTGTCAGGGTGTCCGAAGCAGCGGAACAACCGTCGCCTGTGGAGGAGGAGCCACAGGAAGTCAAGCAAGAGTCCCCAGTGAAAGAGCCATCCCCTGGCCAGGATCCTGAACCACAACCACagccagaaccagaaccagttCAGGAAGCAGAAGCAGTCAAGGAACTTGTGCCAGTGAGAGAGGAGTCCCCAGTGAAGGAGGTGCAACCCACACCGGCCGAGAAAGGCGTGGCAGCTTGTGAGCCACAGCCTGTCACACAGCAGCCAAAGAGATCAGAGGAGGTGTCGCCCACTGCGTCTGTCAACCAGGAGGAGGAGACTGAAGCGGTTGAAGAAAATTGCGGAGTGAGCTGTGCGCCTCTCAAACGCTGGCTGCTGGGCATCCCCTGGCCTACCGCCCCACAGTGCCTGGCCGACCTGAGTCACGTTGCCGATCGGACCCTCCTGAGCTTGCGGAGCGGCCTCAGCTGCCTCACCAACCCCAGCTGCcacagcaacctcaccttgccCAGCTGTCCCAGCCTGTCTACTTGCCCCCACCTCACCTGCCCCACTCTTCCCAGCTGCTCCCATCTCCGCAGCAAACTCACTTGCTCCACTCTCCCCAGCTGTCCCCACCTCCTCAGCTACCTCAACTGTCCCAGTGCCCTCAACTGTCTGAACCGCCAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020418 True 2436 mRNA 0.58 23 18247657 18291605

Neighbor

gene id symbol gene type direction distance location
AMCG00020417 NA coding downstream 2 18235639 ~ 18247655 (-)
AMCG00020414 NA coding downstream 22027 18195740 ~ 18225630 (-)
AMCG00020409 NA coding downstream 71678 18171620 ~ 18175979 (-)
AMCG00020410 NA coding downstream 137475 18104188 ~ 18110182 (-)
AMCG00020411 NA coding downstream 155153 18089099 ~ 18092504 (-)
AMCG00020416 NA coding upstream 23066 18314671 ~ 18334032 (-)
AMCG00020422 NA coding upstream 99201 18390806 ~ 18395296 (-)
AMCG00020424 NA coding upstream 107229 18398834 ~ 18415770 (-)
AMCG00020421 NA coding upstream 127577 18419182 ~ 18431255 (-)
AMCG00020423 NA coding upstream 146599 18438204 ~ 18454657 (-)
G63015 NA non-coding downstream 61607 18184008 ~ 18186050 (-)
G62981 NA non-coding downstream 109359 18137480 ~ 18138298 (-)
G62951 cnot1 non-coding downstream 277966 17968233 ~ 17969691 (-)
G62880 NA non-coding downstream 396544 17848158 ~ 17851113 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding downstream 877211 17364823 ~ 17370446 (-)
G63057 NA non-coding upstream 66220 18357825 ~ 18358910 (-)
G63092 NA non-coding upstream 105862 18397467 ~ 18398731 (-)
G63096 NA non-coding upstream 144920 18436525 ~ 18436939 (-)
G63180 NA non-coding upstream 785872 19077477 ~ 19077758 (-)
G63257 NA non-coding upstream 1342689 19634294 ~ 19636243 (-)
G62961 NA other downstream 207697 18006168 ~ 18039960 (-)
AMCG00020403 NA other downstream 231795 17987181 ~ 18015862 (-)
G62853 necab2 other downstream 621468 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 1429890 16794996 ~ 16817767 (-)
G62618 NA other downstream 1454490 16792866 ~ 16793167 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 1996965 20288570 ~ 20299843 (-)
G63464 NA other upstream 3020597 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 3839237 22130842 ~ 22132737 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other upstream 4149187 22440792 ~ 22466767 (-)
G63679 NA other upstream 4252237 22543842 ~ 22544689 (-)

Expression


Co-expression Network